BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908380
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67970.1 | Symbols: AT-HSFA8, HSFA8 | heat shock transcripti... 1611 0.0
> AT1G67970.1 | Symbols: AT-HSFA8, HSFA8 | heat shock transcription
factor A8 | chr1:25484699-25486462 REVERSE LENGTH=1419
Length=1419
Score = 1611 bits (872), Expect = 0.0
Identities = 1053/1137 (93%), Gaps = 26/1137 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAAATCGACGGACGGTGGTGGTGGG---TCTTCTTCTTCTTCAGTGGCACCGTTC 57
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 150 ATGGTGAAATCGACGGACGGTGGTGGTGGGTCTTCTTCTTCTTCTTCAGTGGCGCCGTTC 209
Query 58 TTGAGAAAATGTTACGAGATGGTTGATGATTCTTCAACTGA-TGCTATAATCTCATGGAG 116
||||||||||||||||| ||||||||||||||| | ||||| | ||||||||||||||||
Sbjct 210 TTGAGAAAATGTTACGATATGGTTGATGATTCTACTACTGACT-CTATAATCTCATGGAG 268
Query 117 TACAAGTGCAGATAACAGCTTTGTTATCTTGGACACGAACGTCTTCTCTGTTGAACTTTT 176
| ||||||||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||
Sbjct 269 TCCAAGTGCAGATAATAGCTTCGTTATCTTGGACACCACCGTCTTCTCTGTTCAACTCTT 328
Query 177 GCCTAAATACTTTAAACACAGCAATTTCTCTAGCTTTATTCGTCAGCTCAATATCTACGG 236
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 329 GCCTAAATACTTTAAACACAGCAATTTCTCTAGCTTCATTCGTCAGCTCAATATCTACGG 388
Query 237 GTTTAGAAAAGTTGATGCAGATCGTTGGGAGTTTGCGAATGACGGGTTTGTTAAAGGTCA 296
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 389 TTTTAGAAAAGTTGATGCAGATCGATGGGAGTTTGCGAATGACGGGTTTGTGAGAGGTCA 448
Query 297 AAAGGATTTATTAAAGAATGTTATCCGGAGGAAGAATGTTCAAAGTAGTGAGCAGAGCAA 356
||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 449 AAAGGATTTGCTGAAGAATGTTATCAGGAGGAAGAATGTTCAAAGTAGTGAGCAGAGCAA 508
Query 357 ACAGGAGAATAGAAGTACAAGTACATATGCTCAGGAAAAGACTGAGAAGAGTGGATTGTG 416
||| |||| || |||||| | ||||||||||| | || | ||||||||||||||
Sbjct 509 ACATGAGAGTACAAGTAC-A--ACATATGCTCA-G----GA---A-AAGAGTGGATTGTG 556
Query 417 GAAAGAAGTTGATATCTTGAAAGGCGATAAGCAGGTATTGGCTCAAGAGTTGATCAAAGT 476
||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 557 GAAGGAAGTTGATATTTTGAAAGGTGATAAGCAGGTATTGGCGCAGGAGTTGATCAAAGT 616
Query 477 TAGGCAGTATCAGGAGACGACGGATACTAAGATGTTACACTTAGAAGATAGAGTTCAAGG 536
|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 617 TAGGCAGTATCAGGAGGTGACGGATACTAAGATGTTACATTTAGAAGACAGAGTTCAAGG 676
Query 537 AATGGAAGAGAGTCAGCAGGAGATGCTTTCGTTTTTGGTAATGGTTATGAAGAATCCTAG 596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 677 AATGGAAGAGAGTCAGCAGGAGATGCTTTCGTTTTTGGTTATGGTTATGAAGAATCCAAG 736
Query 597 TCTTTTAGTTCAGTTGCTTCAACCAAAGGAGAAAAACAGTTGGCGAAAAGC---GGAAGG 653
||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 737 TCTTTTAGTTCAGTTACTTCAGCCAAAGGAGAAAAACACTTGGCGAAAAGCGGGGGAAGG 796
Query 654 AGCGACGATTGTTGAAGAAGTGACTGATGAAGGAGAATCAAACTCATATGGTCTTCCTTT 713
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGCGAAGATTGTGGAAGAAGTGACTGATGAAGGAGAATCAAACTCATATGGTCTTCCTTT 856
Query 714 AGTAACATACCAGCCACCATCGGACAAC---GGAACAGCAAAGTCAAACTCGAACGACGT 770
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 857 AGTAACATACCAGCCACCATCGGACAACAATGGAACTGCAAAGTCAAACTCGAACGACGT 916
Query 771 AAATGATTTCTTGAGAAACGCCGATATGTTGAAGTTCTGCCTAGATGAAAATCATGTACC 830
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 917 AAATGATTTCTTGAGAAACGCCGATATGTTGAAGTTCTGCTTAGATGAAAACCATGTGCC 976
Query 831 ATTAATCATACCTGATCTATACGATGATGGAGCATGGGAAAAGCTTTTGTTATTGAGCCC 890
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 977 ATTGATCATACCTGATCTATACGATGATGGAGCATGGGAAAAGCTTTTGTTGTTGAGCCC 1036
Query 891 TTCAAGGAAGAAGACGAAGAAGCAAGAGAACATTGTGAAGAAAGGAAAGGATGATTCGAC 950
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1037 TTCAAGGAAGAAGACGAAGAAGCAGGAGAACATTGTGAAGAAAGGAAAGGATGATTTGAC 1096
Query 951 ATTGGAGGAGGAGGAGGA---TGGAACTATGGAATTAGAAAAGAGCCATATGCTCAAGCT 1007
|||||||||||||||||| |||||| ||||||||||| |||||| ||||||| |||||
Sbjct 1097 ATTGGAGGAGGAGGAGGAGGATGGAACAATGGAATTAGACAAGAGCTATATGCTTAAGCT 1156
Query 1008 GATATCAGAAGAGATGGAGAAACCAGATGACTTTGAATTTGGACAGCTCACTCCAGAGAG 1067
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1157 GATATCAGAAGAGATGGAGAAACCAGATGACTTTGAATTTGGACAGCTTACTCCTGAGAG 1216
Query 1068 GTCTAGGAATCTTGAGATTCTGACTGAGCAAATGGAATTACTGGCTTCAAATGAATA 1124
||||||||| ||||||||| |||| ||||| |||||||| |||||||||||||||||
Sbjct 1217 GTCTAGGAACCTTGAGATTTTGACAGAGCAGATGGAATTGCTGGCTTCAAATGAATA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5