BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908384
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68170.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1618 0.0
> AT1G68170.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:25551922-25554258 FORWARD LENGTH=1074
Length=1074
Score = 1618 bits (876), Expect = 0.0
Identities = 1012/1078 (94%), Gaps = 8/1078 (1%)
Strand=Plus/Plus
Query 10 GAAATGAGAGATATAACGGCAATGGTAGTGGTTCAGATAGCTTCGGCAGGGTTAAACATA 69
||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1 GAAATGAAAGATATAACGGCAATGGTGGTGGTTCAAATAGCTACGGCAGGGTTAAACATA 60
Query 70 TTTTTCAAGCTAGCAATGGAAGATGGTATGAACCCAAGTGTACTCGTGGCCTATCGTCTC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTTCAAGCTAGCAATGGAAGATGGTATGAACCCAAGTGTACTCGTGGCCTATCGTCTC 120
Query 130 TTGTTTGCTACACTTTTCATGCTTCCTTTGTCCTTCATCTTTCAAAGGAAGAAGAGGCCA 189
||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||
Sbjct 121 TTGTTTGCTACACTTTTCATGATTCCTATATGCTTCATCTTTCAAAGGAAGAAGAGGCCA 180
Query 190 GATTTTACATGGAGGCTCATGTTACTAGCATTAATCTCAGGATTACTCGGTGTGGTGATA 249
|| |||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 181 GAGTTTACATGCAGGCTGATGTTACTAGCATTACTCTCAGGGTTACTCGGTGTGGTGATA 240
Query 250 CCGAGTATCCTAACCATTGCGGGTCTGGCTCTAACGTCAGCAACATTCACCTCTGCAGCT 309
|| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 241 CCAAGTATCCTAACCATTACGGGTCTAGCTCTAACGTCAGCAACATTCACCTCTGCTGCT 300
Query 310 GGCGTTCTCACTCCATTGATCACTTTCATCTTCGCTGCACTTCTTAGGATGGAGAGTGTA 369
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCGTTCTCACTCCATTGGTCACTTTCATCTTCGCTGCACTTCTTAGGATGGAGAGTGTA 360
Query 370 CGGCTTGGATCGAGCGTAGGGTTGGCTAAGGTTTTTGGAACGTTGTTTGGTGTTGGTGGA 429
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CGGCTTGGATCGAGCGTAGGGCTGGCTAAGGTTTTTGGAACATTGTTTGGTGTTGGTGGA 420
Query 430 GCTCTTGTCTTTATATTTTATAGAGGAATAGAGATTC-ATCTATGGTCAACTCATGTTGA 488
||||||||||||||||| ||||||||||||||||| | | |||||||||||||| ||| |
Sbjct 421 GCTCTTGTCTTTATATTCTATAGAGGAATAGAGATCCGA-CTATGGTCAACTCACGTTAA 479
Query 489 CCTAGTTAGCAAACCACGTGACTCCTCACGTGATGCTACCACTCACCATATTTCCATCCT 548
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTAGTGAACCAACCACGTGACTCCTCACGTGATGCTACCACTCACCATATTTCCATCCT 539
Query 549 TGGGGCTCTTCTAGTCTTTGGTGGTAACATTTCCATCTCACTTTGGTTTTTATTGCAGGT 608
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 540 TGGGGCTCTTCTAGTTTTTGGGGGAAACATTTCCATCTCACTTTGGTTTTTATTGCAGGT 599
Query 609 TAAAATAAGCAAACAATTTGGAGGGCCTTATTGGAACGCGACACTAATGAACATGATGGG 668
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TAAGATAAGCAAACAATTTGGAGGGCCTTATTGGAACGCGACTCTAATGAACATGATGGG 659
Query 669 AAGCGTAGTGGCTATGCTTGTCGCTCTTTGCTGGAAACGCGATTT-GAAGGAATGGAGAT 727
| |||||||||||||||||||||||||||||||| ||| |||||| || | |||||||||
Sbjct 660 AGGCGTAGTGGCTATGCTTGTCGCTCTTTGCTGGGAACACGATTTAGATG-AATGGAGAT 718
Query 728 TAGGATGGAATATCAGACTCTTAACCATTGCTTATGCGGCAATTGTGATTTCCGGGATGG 787
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 719 TAGGATGGAATATCAGACTATTAACCATTGCTTATGCGGCAATTCTGATTTCCGGGATGG 778
Query 788 TGGTAGCAGTAAACGCATGGTGCGTCGAGTCTAGAGGGCCGTTGTTTGTATCAGTATTTA 847
|||||||||| |||||||||||| | ||||||||||| ||||| |||||||| |||||||
Sbjct 779 TGGTAGCAGTCAACGCATGGTGCATTGAGTCTAGAGGACCGTTATTTGTATCGGTATTTA 838
Query 848 GCCCTATAGGACTTGTGATCGTAGCTCTTGTTGGATCATTTGTT-CTAGATGAAACACTT 906
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 839 GCCCTGTAGGACTTGTGATCGTAGCTCTTGTTGGATCATTT-TTGCTAGATGAAACACTT 897
Query 907 CATTTGGGGAGCATAGTTGGTACAGTGATTATCGTTGGAGGATTATATC-TTGTGCTATG 965
||||||||||||||| |||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 898 CATTTGGGGAGCATAATTGGTACAGTGATTATCGTTGGAGCATTATA-CATTGTGCTATG 956
Query 966 GGGTAAAAACAAGGAAATGAAGAGTATCCCAACGACCTCGAATCATATTGAAACAAATAA 1025
|| |||||||||||||||||||||||| | ||||| ||| |||||| ||||||||||||
Sbjct 957 GGCTAAAAACAAGGAAATGAAGAGTATGCTTACGACATCGGATCATAATGAAACAAATAA 1016
Query 1026 GACTAGCAAAGACATCACACTCAACAATCTCCCCACATTAAGTACAAATGTCCTTTGA 1083
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1017 GACTAGCAAAGATATCACAGTCAACAATCTCCCAACATTAAGTACAAATGTCCCTTGA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5