BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908402
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25350.2 | Symbols: OVA9 | glutamine-tRNA ligase, putative /... 259 7e-68
> AT1G25350.2 | Symbols: OVA9 | glutamine-tRNA ligase, putative
/ glutaminyl-tRNA synthetase, putative / GlnRS, putative |
chr1:8889137-8894261 REVERSE LENGTH=2602
Length=2602
Score = 259 bits (140), Expect = 7e-68
Identities = 205/236 (87%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 899 TGTATGACTTGGCAGTGGAGTTGATCCGGAGAGGCCATGCATATGTTGATCACCAGACTG 958
||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 1117 TGTATGATTTGGCAGTGGAGTTGATTCGGAGAGGTCATGCTTATGTTGATCATCAGACTG 1176
Query 959 GAGAAGAGGTAAAAGAGTACAGAGAGAAGAAAATGAACAGCCCTTGGAGAGACAGGCCTA 1018
|| ||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1177 CTGATGAGATAAAAGAGTACAGAGAGAAGAAAATGAACAGCCCCTGGAGGGACAGACCTA 1236
Query 1019 TTGAAGAATCTCTGAAACTTTTTGACGAAATGAAACGAGG-ATTGTTCGAAGAAGGGAAG 1077
||||||||||||| ||||||||||| ||||||| |||||| || || || |||||||||
Sbjct 1237 TTGAAGAATCTCTAAAACTTTTTGATGAAATGAGACGAGGCATCATT-GAGGAAGGGAAG 1295
Query 1078 GCGACGCTACGAATGAA--AATGAATATGCAGAATGATAACTTTAATATCTATGAT 1131
|| || ||| ||||||| || || |||||||| ||| || |||||||| ||||||
Sbjct 1296 GCAACCCTAAGAATGAAGCAA-GA-TATGCAGAGTGACAATTTTAATATGTATGAT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107429166300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5