BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908458

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68795.1 | Symbols: CLE12 | CLAVATA3/ESR-RELATED 12 | chr1:2...   473    4e-133


> AT1G68795.1 | Symbols: CLE12 | CLAVATA3/ESR-RELATED 12 | chr1:25840855-25841652 
REVERSE LENGTH=798
Length=798

 Score =  473 bits (256),  Expect = 4e-133
 Identities = 331/366 (90%), Gaps = 9/366 (2%)
 Strand=Plus/Plus

Query  1    ATGCTTAGACTTTCTTCATCATCTTCCATGGCCTTAAAATTCTCTCAAATCCTCTTCATA  60
            ||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct  218  ATGCTTAGAATTTCTTCATCATCTTCCATGGCCTTGAAATTTTCTCAAATTCTCTTCATA  277

Query  61   GTTCTATGGctctctctcttattcctcctcctccaccacttctactcccttaacttccgc  120
            ||| ||||||| |||||||| || ||||||||||||||||| |||||||| |||||||| 
Sbjct  278  GTTTTATGGCTATCTCTCTTCTTTCTCCTCCTCCACCACTTGTACTCCCTCAACTTCCGT  337

Query  121  cgtctctactctctAAACGCGGTGGAGCCATCAGTGTCGAAGCAACACCACCGTAGCTAC  180
            ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||  
Sbjct  338  CGTCTCTACTCTCTAAACGCGGTGGAGCCATCATTGTTGAAGCAACACTACCGTAGCT--  395

Query  181  ACCATTAGATTAGTAAGCAGAAAAACTCTCTCCCACAAATTCGACTTCACGCCTTTCCAT  240
               | ||||||||| |||||||||  ||||||| ||| |||||||||||| |||||||||
Sbjct  396  ---A-TAGATTAGTGAGCAGAAAAGTTCTCTCCGACAGATTCGACTTCACACCTTTCCAT  451

Query  241  AGCCGAGATAACAGCCGCCATGATCACCGTCATTCCGGTGAGCAATACGACGGTGATGAG  300
            ||||||||||||||||| ||| |  ||| || |||||| |||||||||||||||||||||
Sbjct  452  AGCCGAGATAACAGCCGACAT-A--ACCATCGTTCCGGCGAGCAATACGACGGTGATGAG  508

Query  301  ATCGACCCTCGTTACGGAGTGGAGAAACGCCGTGTTCCCTCCGGACCTAATCCGTTGCAC  360
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  509  ATAGACCCTCGTTACGGAGTGGAGAAACGCCGTGTTCCCTCCGGACCCAATCCGTTGCAC  568

Query  361  CATTGA  366
            ||||||
Sbjct  569  CATTGA  574



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17191570158


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5