BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908471

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68907.1 | Symbols:  | Defensin-like (DEFL) family protein |...   433    5e-121


> AT1G68907.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:25907508-25907891 REVERSE LENGTH=291
Length=291

 Score =  433 bits (234),  Expect = 5e-121
 Identities = 274/293 (94%), Gaps = 4/293 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAATGTCTCTCAAGCTCGTCTTCTTGTTCTCCCTCACAGTCATATCATTTTGT  60
            |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct  1    ATGGAGAAAACGTCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAGTCATAGCATTGTGT  60

Query  61   TTGTCTTTGAGTGCCGCGAGGGAGATGGCGAAAGAAGAAGTGAATTGCATCGGCGGCCAT  120
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  61   TTGTCTTTGAGTGCCGCGAGAGAGATGGCGAAAGAAGAAGTGAATTGCATAGGCGGCCAT  120

Query  121  TGTCCTGATGGAAAGAAGAACTGTAACTGCTTGCTTCCTATAGCACCAACAATGGACATT  180
            |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| 
Sbjct  121  TGTCCTGATGGAAAGAAGGACTGTAACTGCTTGCCTCTTATAGCACCAACAATGGACATA  180

Query  181  TATGAGACCAATGCA-TCTTGCCTCGTAGATAACGAATGCATCAAGTACTGTCCTAAGAG  239
            ||||||||||||| | ||||||| |  ||||||||||||||||||||||||||||||| |
Sbjct  181  TATGAGACCAATG-AGTCTTGCCGCACAGATAACGAATGCATCAAGTACTGTCCTAAGGG  239

Query  240  CTGCAAGATTGT-GAACTGTAATTTTGGAACCTGTTTGTGTGAGTATTGTTAA  291
            |||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct  240  CTGCAAGATTGTTGA-CTGTAATTTTGGAACCTGTTTGTGTGAGTACTGTTAA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5