BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908520
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1653 0.0
> AT1G69430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26650.1);
Has 216 Blast hits to 215 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26097787-26099388
FORWARD LENGTH=1602
Length=1602
Score = 1653 bits (895), Expect = 0.0
Identities = 1004/1055 (95%), Gaps = 13/1055 (1%)
Strand=Plus/Plus
Query 4 ATGGAAATGGGTTTATCTGGGATGATGAACCAAGGAGG-----A-TCAAAATTTCGGAAA 57
||||||||||||||||||||||||||||| || ||||| | |||||||| ||||||
Sbjct 239 ATGGAAATGGGTTTATCTGGGATGATGAATCATGGAGGATCAAATTCAAAATTACGGAAA 298
Query 58 TTTGAGATAGAatcatcatcatcat---catcatcatcctctgatcatcaGTTTCATTCG 114
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 299 TTTGAGATAGAATCATCATCATCATCACCATCATCATCCTCTGATCATAAGTTTCATTCG 358
Query 115 ATGAATGCTCTTGAGATCTTGAGAGAAACTGTTCGAATTCTCCGGTATAATCTTGGTTCT 174
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 359 ATGAATGCTCTTGAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCT 418
Query 175 TTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCAATTCTGTTACCGAACCTT 234
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 419 TTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCTATTCTATTACCAAACCTT 478
Query 235 TTAGTTGATCAATCAGTTGTTAATTCACTCACAGTGAGGCTTCTCTTAGTTTCGAAATCC 294
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 479 TTAGTTGATCAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAATCA 538
Query 295 AGTGGTCTTCCTTTGTTGCCTTTTGTGAGAAACTCTTGTCAGAAATTCTCTGAGACAGCT 354
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 539 AGTGGTCTTCCTTTATTGCCTTTTGTTAGAAACTCTTGTCAGAAATTCTCTGAGACAGCT 598
Query 355 GTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCT 658
Query 415 GTGGTTTACTCTGTGGATTGCACTTATTCGAGGAAAAAAGTTGTGATAACTAAGTTCT-T 473
|||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| | |
Sbjct 659 GTGGTTTACTCTGTTGATTGCACTTATTCGAGGAAGAAAGTTGTGGTGACTAAGTT-TGT 717
Query 474 GGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACGGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 GGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACTGT 777
Query 534 GATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTTGTCGCGGTTTGTAGCTCCTTT-T 592
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 778 GATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTCGTCGCGGTTTGTAGCTC-TTTCT 836
Query 593 ATGTTCTTGGATTCTCTCCTGATTTCAATGCTTATGGAGCTATCTTAGTTGGTTTGGTGT 652
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 837 ATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGTGT 896
Query 653 TCTCAGTAGTGTTTGCAAATGCTATCATTATCTGCAACACCACGATCGTGATCTCGATTC 712
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 897 TCTCAGTAGTGTTTGCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGATTC 956
Query 713 TTGAAGATGTTTCGGGGCCTCAAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGGCAGA 772
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 957 TTGAAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGACAGA 1016
Query 773 CTCAAGTTGGTTTATTGATATTTCTAGGATCAACAATAGGGTTAACGTTCGTGGAAGGAT 832
|||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1017 CTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAAGGAT 1076
Query 833 TGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGGTCTTCGAGGTTATGGGAAG 892
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1077 TGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGGGAAG 1136
Query 893 GTCCACTACTTGTGGTGATGTATTCATTTGTAGTGCTTATTGATACAATGATGAGTGCAG 952
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1137 GTCCACTACTTGTGGTGATGTATTCATTTGTGGTGCTTATTGATACAATGATGAGTGCAG 1196
Query 953 TGTTCTATTTTAGTTGCCGGTCTTATAGCATGGAAGCTGTTGAAGCTTTGGAAGCTTCTG 1012
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 TGTTCTATTTTAGTTGCCGGTCTTATAGTATGGAAGCTGTTGAAGCTTTGGAAGCTTCTG 1256
Query 1013 GAGAGATTGTGTCCCAAGATTTGTCTCTGCTTTAA 1047
||||||||||||||||||||||||| |||||||||
Sbjct 1257 GAGAGATTGTGTCCCAAGATTTGTCCCTGCTTTAA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5