BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908526
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69485.1 | Symbols: | Ribosomal L32p protein family | chr1:... 549 7e-156
AT1G26740.1 | Symbols: | Ribosomal L32p protein family | chr1:... 316 8e-86
> AT1G69485.1 | Symbols: | Ribosomal L32p protein family | chr1:26118229-26119576
REVERSE LENGTH=730
Length=730
Score = 549 bits (297), Expect = 7e-156
Identities = 387/430 (90%), Gaps = 8/430 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTTGAAACTGACGACGCTAAAACGCGCCG-TGGTTGAATCCCGGCGCATTTTAGA 59
|||||||||| ||||||||||||||||||||||| | | ||| | |||||| || |||||
Sbjct 1 ATGGCGTTGAGACTGACGACGCTAAAACGCGCCGCT-GCTGATTTCCGGCGTATATTAGA 59
Query 60 ATTCCGAAGCTTCAACCACGTTTCCGCGATCTCTCCTCCCTTGA-ACGGCGCCATAGATC 118
|| |||| |||||| |||| | ||||| ||||||||||| | || ||||||| ||||
Sbjct 60 ATCCCGATGCTTCAGTTACGTCGCTGCGATTTCTCCTCCCTT-AGACAGCGCCATCGATC 118
Query 119 TCTCTACCGCTTCGCCGCCGCTGGTCTTACCGGAGTTTTATCAGGATCTATCGGATTCT- 177
||||||||||||||||||||| || ||||||||||||||| | | | ||||||||||
Sbjct 119 GCTCTACCGCTTCGCCGCCGCTTGTTTTACCGGAGTTTTATAATTAACAATCGGATTCTA 178
Query 178 TCCATTGATGACAAGAATTTCAGATTCTGTTTCCCGA-TTTCCTTTTTCGGTGGATCCAT 236
| ||||||||| || || ||||||||| |||||| || ||| || |||||||||||||||
Sbjct 179 T-CATTGATGAAAATAACTTCAGATTCGGTTTCCTGAGTTT-CTCTTTCGGTGGATCCAT 236
Query 237 GGAGCTAATGGCTGTTCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGG 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGAGCTAATGGCTGTGCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGG 296
Query 297 ACCAAAGGCCCTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGTTAA 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAAAGGCCTTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGTTAA 356
Query 357 GCTGCCACATTTCTACTGCTGCAGCGGTGAGCGGGTAATACCTGATGAACAAAGCAATTC 416
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 357 GCTGCCACATTTCTACTGCTGCAGTGGTGAGCGGGCAATACCTGATGAACAAAGCAATTC 416
Query 417 AAACAACTGA 426
||||||||||
Sbjct 417 AAACAACTGA 426
> AT1G26740.1 | Symbols: | Ribosomal L32p protein family | chr1:9244981-9246603
REVERSE LENGTH=752
Length=752
Score = 316 bits (171), Expect = 8e-86
Identities = 350/434 (81%), Gaps = 21/434 (5%)
Strand=Plus/Plus
Query 1 ATGGCGTTGAAACTGACGA-CGCTAAAACGCGCCGTGGTTGAATCCCGGCGCATTTTAGA 59
|||||||||| | |||| | ||||||||||||||| |||||| ||| | |||||||| ||
Sbjct 49 ATGGCGTTGAGATTGAC-ATCGCTAAAACGCGCCGCGGTTGAGTCCTGTCGCATTTTGGA 107
Query 60 ATTCCGAAGCTTCAA-CCACGTTTCCGCGAT--CTCTCCTCCCTTGAACGGCGCCATAGA 116
| ||||||||| || || || | ||||| || ||| ||||||||||| || | ||
Sbjct 108 AACCCGAAGCTT-AAGTCATGTCGCTGCGATGCCT-TCC-CCCTTGAACGGAGCTTTTGA 164
Query 117 TCTCTCTACCGCT-TCGCCGCCGCTGGTCTTACCGGAGTTTTATCAGGATCTATCGGATT 175
|| | | | || | |||||||||||| ||||| ||||| ||||| ||| | ||| |
Sbjct 165 TCGCCCGATTTCTAT-GCCGCCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGG-GT 222
Query 176 CTTCCATTGATGACAAGAATTTCAGATTC-TGTTTCC-CGATTTCCTTTTTCGGTGGATC 233
|| || || || |||| ||| | ||| | |||| | ||| | |||| ||||||
Sbjct 223 -TT-GATCGAAGAAAAGAGCTTCGGGTTCGGGCTTCCTAGTTTTGC-TTTT-AATGGATC 278
Query 234 CATGGAGCTAATGGCTGTTCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAA 293
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 279 CATGGAGCTAATGGCTGTGCCTAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAA 338
Query 294 TGGACCAAAGGCCCTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGT 353
||| |||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 339 TGGTCCAAAGGCTCTTAAGCCTGTTCCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGT 398
Query 354 TAAGCTGCCACATTTCTACTGCTGCAGCGGTGAGCGGGTAATACC-TGA-TGAACAAAGC 411
|||||||||||||||| ||| ||||||||||||||| ||| ||| | | ||| || ||
Sbjct 399 CAAGCTGCCACATTTCTTCTGTTGCAGCGGTGAGCGGCTAA-ACCCT-ACTGAGTAAGGC 456
Query 412 AATTCAAACAACTG 425
||||| ||||||||
Sbjct 457 AATTCGAACAACTG 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5