BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908534
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69540.1 | Symbols: AGL94 | AGAMOUS-like 94 | chr1:26145044-... 1585 0.0
> AT1G69540.1 | Symbols: AGL94 | AGAMOUS-like 94 | chr1:26145044-26147571
REVERSE LENGTH=1540
Length=1540
Score = 1585 bits (858), Expect = 0.0
Identities = 986/1046 (94%), Gaps = 16/1046 (2%)
Strand=Plus/Plus
Query 1 ATGGGTAGAGTGAAGCTAAAGATAAAGAAACTACAAAACATGAATGGACGTCAATGTACG 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 ATGGGTAGAGTGAAGCTAAAGATAAAGAAACTACAGAACATGAATGGACGTCAATGTACG 303
Query 61 TATGCGAAAAGGAGACATGGGATCATGAAAAAGGCTAAGGAGTTATCGATCTTATGCGAC 120
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 304 TATACGAAAAGGAGACATGGGATTATGAAAAAGGCTAAGGAGTTATCGATCTTATGCGAC 363
Query 121 ATCGATGTTGTGCTTCTCATGTTTTCTCCCATGGGGAAGGCTTCAGTTTGCATAGGCAAA 180
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 364 ATAGATGTTGTGCTTCTCATGTTTTCTCCCATGGGAAAGGCTTCAATTTGCATAGGCAAA 423
Query 181 CACAGCATTGGAGAAGTCATTGCTAAGTTTGCTCAACTCAGTCCTCAAGAAAGGGCAAAG 240
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 424 CACAGCATTGGAGAAGTCATTGCTAAGTTTGCTCAACTCTCTCCTCAAGAAAGAGCAAAG 483
Query 241 AGGAAATTGGAAAACCTTGAAGCCTTGAGGAAAA-TATTCATGAAAGTTAACCACGATAT 299
||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 484 AGGAAGTTGGAAAACCTTGAAGCCTTGAGGAAAACT-TTCATGAAAGCTAACCACGATAT 542
Query 300 AGATATATCAAAGTTTCTAGACAGAAGCAGTACACCAACAGTTGAGGTGCTTAGCGAAAA 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 543 AGATATATCAAAGTTTCTAGACAGAATTAGTACACCAACAGTTGAGGTGCTTAGCGAAAA 602
Query 360 AATCAGGTTTCTGCAAACACAATTATCAGATATACACACACGACTAAGCTACTGGACCGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AATCAGGTTTCTGCAAACACAATTATCAGATATACACACACGACTAAGCTACTGGACCGA 662
Query 420 TGTAGAAAATATCGACAGTGTAGATGATTTGCAGCAACTAGAACATTCATTAAGACAATC 479
|||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 663 TGTAGATAATATCGACAGCGTAGATGTTTTGCAGCAACTAGAACATTCACTAAGACAATC 722
Query 480 TCTGGCTCAAATCTATGGTCGTAAGGCGAGCATGCCG-AGACATCAGCATCGACAACTTA 538
||||||||||||||||||||||||||||||||||||| | || |||||| | ||||||||
Sbjct 723 TCTGGCTCAAATCTATGGTCGTAAGGCGAGCATGCCGCA-ACGTCAGCAGCAACAACTTA 781
Query 539 TGTCCTCCA-AATGCAAAAACCAGTTGCAGACTGAAATAGATATAGATTTCGGAATGGAG 597
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGTCCT-CACAATGCAAAAACCAGTTGCAGACTGAAATAGATATAGATTTCGGAATGGAG 840
Query 598 ATGGAGCAACAGCTTGAGAATTTCTCATGGGTTCGTACCGATGAAAACATGAATGTTCCT 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGGAGCAACAACTTGAGAATTTCTCATGGGTTCGTACCGATGAAAACATGAATGTTCCT 900
Query 658 CCAAAAGAAGAAGACCCTAATATGCAGCTTCATCAGATGTACAGGGACATAAAGTGTTCT 717
| ||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||
Sbjct 901 ATAGAAGAAGAAGACCCTAATCTGCAGCTTCATCACATGTACAAGGACATAACGTGTTCT 960
Query 718 GCAAGTTCATCTCTTGGAAATTACTCAGGACTCTTCTTTAGTAAAAGCTCAGATCTCTCA 777
||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 961 GCAAGTTCAGCTCTTGGAAATTACTCAGGA--C-TCTTTAGTAAAAGCTCAGATATCT-T 1016
Query 778 ACTCCAAAATTACAAACCGGCAGTATTCCCGGGACAGCAGCTGATCCAAACCAACAAATT 837
| | |||| || ||||||| || |||||||||||| | |||||||| ||||||| ||||
Sbjct 1017 A--CAAAAACTAGAAACCGGTAGCATTCCCGGGACATCGGCTGATCCGAACCAAC-AATT 1073
Query 838 -AGCAATCTCAGTTTCCTAAATGATCAAAAGCTTCAGCAACTAGCTGAGTGGAATCTATT 896
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 CAGCAATCTCAGTTTCTTAAATGATCAAAAGCTTAAGCAACTAGCTGAGTGGAATCTATT 1133
Query 897 AGGAAGTCCCGCGGATTACTACGTTAGCCAGATCTTGGAAGCTTCTTATAAGCCTCAG-T 955
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1134 AGGCAGTCCTGCGGATTACTACGTTAGCCAGATCTTGGAAGCTTCTTATAAGCCTCAGAT 1193
Query 956 TCGGAGGAAAAAACAACTGCGCTTCTTCTGAAACATTACCTTATGTTGCGGTCTTCGATG 1015
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 T-GGAGGAAAAAACAACGGCGCTTCTTCTGAAACATTACCTTATGTTGCGGTCTTCGATG 1252
Query 1016 ATCCTCTATATTTTTGGCCAAACTGA 1041
||||||||||||||||||||||||||
Sbjct 1253 ATCCTCTATATTTTTGGCCAAACTGA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5