BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908535
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69550.1 | Symbols: | disease resistance protein (TIR-NBS-L... 863 0.0
AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 337 4e-91
> AT1G69550.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class) | chr1:26148021-26153555 REVERSE LENGTH=5199
Length=5199
Score = 863 bits (467), Expect = 0.0
Identities = 735/862 (85%), Gaps = 27/862 (3%)
Strand=Plus/Plus
Query 678 TGATGGTTTCGAGGATCTTGCTTGGAAAGTGACAAGACTTGCTGGTAGGCTCCCTTTGGG 737
||||||||||||| | |||||| |||||| |||||||||||||||| |||||||||||
Sbjct 1483 TGATGGTTTCGAGAAGCTTGCTACGAAAGTTACAAGACTTGCTGGTAATCTCCCTTTGGG 1542
Query 738 ACTTAGGGTTATGGGTTCTCGTTTAAAAGGAATGTCCAAGGAAGAGTGGAAAGCGGAACT 797
|||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||
Sbjct 1543 ACTTAGGGTTATGGGTTCTCATTTCCGGGGAATGTCCAAGGAAGATTGGAAAGGGGAACT 1602
Query 798 ACCAAGGTTAAGGGTTCGCCTTAACGGAGATATATGGAGCATTTTAAAGTATAGTTATGA 857
|||||||||| || |||||||| ||||||| ||| ||||||||||||| | |||||| ||
Sbjct 1603 ACCAAGGTTACGGATTCGCCTTGACGGAGAAATAGGGAGCATTTTAAAATTTAGTTACGA 1662
Query 858 TGCCTTGGACGACGAAGACAAAGATTTATTTCTCTATATAGCCTGCTTTTTCAACGATGA 917
|| |||||||||||||||||||||||| |||||| ||||||| || ||||| ||||| ||
Sbjct 1663 TGTCTTGGACGACGAAGACAAAGATTTGTTTCTCCATATAGCATGTTTTTTTAACGACGA 1722
Query 918 AAGCATTGATCATACCTTTGAGGATACTTTTAAAAATAATTTCTCGAACGTGCAGCAAGG 977
| ||||||||||||||||||| |||||| || | || ||||| |||||||||| |||
Sbjct 1723 AGGCATTGATCATACCTTTGAAGATACTCTTCGTCACAAATTCTCAAACGTGCAGCGAGG 1782
Query 978 GTTTCGGGTTTTAGTTCAAAGATCTCTCATATCCGAGGAGAGATAC-CAACCGATGCATA 1036
| ||| ||| ||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 1783 GCTTCAGGTCTTAGTTCAAAGATCTCTCATATCCGAGGATTTA-ACTCAACCGATGCATA 1841
Query 1037 ATCTACTAGTTCAATTGGGTAGAGAAATTGTGCGTAAGCAATCCA---ATGAGCCTGGGA 1093
||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||||
Sbjct 1842 ATCTACTAGTTCAATTGGGTAGAGAAATTGTTCGTAACCAATCCGTTTATGAACCTGGGA 1901
Query 1094 AACGTCAATTTTTAGTTGATCCTAGGGATG-TTTGTGAAGTACTCACT-GATCATACAGG 1151
||||||||||| |||||||| | ||| | ||||||||||||| ||| | |||||||||
Sbjct 1902 AACGTCAATTTCTAGTTGATGGAAAGGA-GATTTGTGAAGTACTTACTAG-TCATACAGG 1959
Query 1152 TAGTGAAAGTGTTATAGGCCTAAGTTTGGAAGTTTAT-GAGAACGTAGACAAACTAAATA 1210
|||||||||||||||||| ||| ||| ||||||||| | || | | ||| |||||||||
Sbjct 1960 AAGTGAAAGTGTTATAGGCATAAATTTCGAAGTTTATTG-GAGCATGGACGAACTAAATA 2018
Query 1211 TAAGTGAGAGAGCTTTTGAAAAAATGTCTAATCTTCAATTTTTGAGAATCTTT-AAA--- 1266
||||||| |||| ||||||| ||||||||||||||||||||| ||| || | |||
Sbjct 2019 TAAGTGATAGAGTTTTTGAAGGAATGTCTAATCTTCAATTTTTTAGATTCGATGAAAATT 2078
Query 1267 -----GGAAGATGGCACTTACCACAAGTTCTAAACAATCTACCTCCAAATCTTAGAATTC 1321
||||||| |||||| ||||||| ||||||| ||||||||||||| ||||||||||
Sbjct 2079 CTTATGGAAGATTGCACTTGCCACAAGGTCTAAACTATCTACCTCCAAAACTTAGAATTC 2138
Query 1322 TAGAATGGGATGATTATCCAATGTCATGTTTGCCTTCTAAGTTTAATCCGGAGTTCCTTG 1381
|| | |||||| | ||||| ||| || ||||||||||||||||||||| | |||| ||||
Sbjct 2139 TACATTGGGATTACTATCCGATGACAAGTTTGCCTTCTAAGTTTAATCTGAAGTTTCTTG 2198
Query 1382 TCAAGATATTATTGAAAGGCAGCAAGCTCGAGAAACTGTGGGAAGAAAATCAACAGCGGC 1441
|||||||| |||||||| ||| ||||||||||||||||||||| || ||||| || |
Sbjct 2199 TCAAGATAATATTGAAACACAGTGAGCTCGAGAAACTGTGGGAAGGAATTCAAC--CG-C 2255
Query 1442 TTATCAATCTCAAGGTGATGGATTTACGCTATTC-AGAAAATTTGAAGGAGCTTCCTAAT 1500
|| ||||||||||||||||||||||||| ||||| || | |||||| ||||||||||||
Sbjct 2256 TTGTCAATCTCAAGGTGATGGATTTACGTTATTCTAGTCA-TTTGAAAGAGCTTCCTAAT 2314
Query 1501 CTCTCAA-AGGCCACTAATCTC 1521
||||||| || ||| |||||||
Sbjct 2315 CTCTCAACAG-CCATTAATCTC 2335
Score = 737 bits (399), Expect = 0.0
Identities = 512/564 (91%), Gaps = 17/564 (3%)
Strand=Plus/Plus
Query 121 TCTTCTACATCTCCTCCATCCACGTTgtcttctttaacatctcctccgtcttctttgtct 180
||||| |||||||||||||| ||||||||||||| |||| | || | || | ||||
Sbjct 326 TCTTCAACATCTCCTCCATCTACGTTGTCTTCTTCAACA--T-CT-CATC--C---GTCT 376
Query 181 tcttcaacttctccttcatcttctttgtcttGCACCGGGACTCACCATGTCTTTGCGAGC 240
||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| | |||
Sbjct 377 TCTTCAACTTCTCCTCCATCATCTTTGTCTTGCACCGGGACTCACCATGTATTTCCAAGC 436
Query 241 TTCCGTGGGGAAGACGTTCGCAGAAAAATTT-TAAGTTACATTCAACAGGAGTTTCAAAG 299
||||||||||| ||||||||||| ||| ||| | ||| |||||||| ||||||||| ||
Sbjct 437 TTCCGTGGGGATGACGTTCGCAG-AAACTTTCTCAGTCACATTCAAAAGGAGTTTCGGAG 495
Query 300 AAAAGGAATCATTCCGTTCATTGATAATGAGATCAAGCGAGGAGAATCCATTGGTCCTGA 359
||||||||||| ||||||||| ||||||||||| | | ||||||||||||| ||||||||
Sbjct 496 AAAAGGAATCACTCCGTTCATCGATAATGAGATTAGGAGAGGAGAATCCATCGGTCCTGA 555
Query 360 ACTCATTAAGGCCATTAGAGAATCTAAGATCGCGATTG-TCTTACTCTCGAGGAACTATG 418
||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct 556 ACTCATTAAGGCCATTAGAGAATCTAAGATCGCAATTGTTC-TGCTCTCGAGGAACTATG 614
Query 419 CTTCTTCAAAGTGGTGTCTTGACGAATTGGTGGAGATTATGGAATGCAAGAAAAAGTTTG 478
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 615 CTTCTTCAAAGTGGTGTCTTGAAGAATTGGTGGAGATTATGAAATGCAAGAAAGAGTTTG 674
Query 479 GTCTAACAGTGTTTG-TAGTTTTCTATGAAGTTGATCCATCCCATGTTAAGAAGCTGACC 537
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 675 GTCTAACAGTGTTTGCCA-TTTTCTATGAAGTTGATCCATCCCATGTTAAGAAGCTTACC 733
Query 538 GGAGAATTTGGAGCTGTCTTTCAGAAAACTTGTAAGGGTAGAACAAAGGAGGAGATT-TG 596
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 734 GGAGAATTTGGAGCTGTCTTTCAGAAAACTTGTAAGGGTAGAACAAAGGAGAATATTATG 793
Query 597 GAGATGGAGACAAGCTTTTGAGGAAGTGGCTACAATTGCTGGTTACGATTCAAGAGACTG 656
||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 794 -AGATGGAGACAAGCTTTTGAGGAGGTTGCTACAATTGCTGGTTACGATTCAAGAAACTG 852
Query 657 GGAAAATGAAGCTGCCATGGTTGA 680
||||||||||||||||||| ||||
Sbjct 853 GGAAAATGAAGCTGCCATGATTGA 876
Score = 455 bits (246), Expect = 1e-126
Identities = 333/375 (89%), Gaps = 5/375 (1%)
Strand=Plus/Plus
Query 1864 CTCAACAAATGCACGAAGTTGGTATCACTCCCGCAGCTTCCAAATTCCTTATCAATTTTA 1923
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3785 CTCAACAAATGCACGAAGCTGGTATCACTCCCGCAGCTTCCAGATTCCTTATCAGTTTTA 3844
Query 1924 AATGCAGAATCATGTGAGTCCTTGGAGACACTTGCTTGCTCCTTTCCTAATCCCAAAGTT 1983
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 3845 GTTGCAGAATCATGTGAGTCCTTGGAGACACTTGCTTGCTCCTTTCCGAATCCCCAAGTT 3904
Query 1984 TGTCTCAAATTTATTGACTGCTGGAAACTGAATGAAAAAGGGAGAGACATCATCATCCAG 2043
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 3905 TGGCTCAAATTTATTGACTGCTGGAAACTGAATGAAAAAGGGAGAGATATCATCGTCCAG 3964
Query 2044 ACATCGACAAGTAGTTACGCGATCTTGCCAGGTAGAGAAATTCCTGCGTTCTTCGCTTAC 2103
||||||||||||| ||| |||| || |||||||||||| | |||||||| ||| |||||
Sbjct 3965 ACATCGACAAGTAACTACACGATGTTACCAGGTAGAGAAGTGCCTGCGTTTTTCACTTAC 4024
Query 2104 CGAGCTACTACTGGAGGTTCTGTGGCAGTGAAGTTTAATCAGAGGCGTCT-TCCTACATC 2162
|||||||| |||||||||||| ||||||||||||| ||| |||||| | | || ||||||
Sbjct 4025 CGAGCTACCACTGGAGGTTCTCTGGCAGTGAAGTTGAATGAGAGGCAT-TGTCGTACATC 4083
Query 2163 TTTTAGATTTAAGGCTTGCATCTTGCTGGTTTACAA-GGGTGATGAAGCTGATTACGCGG 2221
|| ||||||||| |||||||||||||||||| | || |||||| || ||| | | ||
Sbjct 4084 TTGTAGATTTAAAGCTTGCATCTTGCTGGTT-AGAAAGGGTGACAAAATTGACTGTGAGG 4142
Query 2222 AATGGGG-TCCATAT 2235
||||||| ||| |||
Sbjct 4143 AATGGGGGTCCGTAT 4157
Score = 147 bits (79), Expect = 7e-34
Identities = 137/164 (84%), Gaps = 8/164 (5%)
Strand=Plus/Plus
Query 2235 TTTAACGGAGCATCTGTACATATTCGAAATGGAAGTTAAAA-ATGTGGAATCCAG-AGAG 2292
|||||| ||||||||||||| ||||||||| |||| |||| |||| ||||| | ||||
Sbjct 4225 TTTAACTGAGCATCTGTACACATTCGAAATCGAAG-CAAAAGGTGTGAAATCC-GTAGAG 4282
Query 2293 ATTTTC-TTAAAGTTCGGAA-CCCACAGTAGCATATGGGAGATAGGTAAATGCGGGATAC 2350
|| || || |||||| || | ||| | | ||||||||||||| ||||||||||||
Sbjct 4283 CTTGTCATT-AAGTTC-CAATTCGGCAGGAAAAAATGGGAGATAGGTGAATGCGGGATAC 4340
Query 2351 GCCCACTCTTGGAGGACGACACTCACGTCGAAGGTTCTATATAA 2394
|||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 4341 GCCCACTCTTGGAGGAGGACACTCACGTCGAAAGTTCTATATAA 4384
> AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:24494678-24498542 FORWARD LENGTH=3269
Length=3269
Score = 337 bits (182), Expect = 4e-91
Identities = 411/518 (79%), Gaps = 30/518 (6%)
Strand=Plus/Plus
Query 178 tcttcttcaac-ttctccttcatcttctttgtcttGCAC-CG-GGACTCACCATGTCTTT 234
||||||||| | | ||||||||| |||| ||| ||| | |||| || || ||||||
Sbjct 153 TCTTCTTCATCAGT-TCCTTCATCATCTTCGTC--CCACAAGTGGACACATCAAGTCTTT 209
Query 235 GCGAGCTTCCGTGGGGAAGACGTTCGCAGAAAAATTT-TAAGTTACATTCAAC-AGGAGT 292
| ||||||||||||||||| || || || | ||| | ||| | |||| || ||||||
Sbjct 210 CCAAGCTTCCGTGGGGAAGATGTACGTAG-AGGTTTTCTCAGTCATATTC-ACAAGGAGT 267
Query 293 TTCAAAGAAAAGGAATCATTCCGTTCATTGATAATGAGATCAAGCGAGGAGAATCCATTG 352
|||||||||| ||||| | || ||||||||||||||||||||| |||||||||||||||
Sbjct 268 TTCAAAGAAAGGGAATTACACCATTCATTGATAATGAGATCAAGAGAGGAGAATCCATTG 327
Query 353 GTCCTGAACTCATTA-AGGCCATTAGAGAATCTAAGATCGCGATTGTCTTACTCTCGAGG 411
||| |||| ||| || | || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 328 GTCTTGAAATCA-TACATGCGATTAGAGAATCTAAGATCGCGATTGTCTTGCTCTCTAGG 386
Query 412 AACTATGCTTCTTCAAAGTGGTGTCTTGACGAATTGGTGGAGATTATGGAATGCAA-GAA 470
||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||| |||
Sbjct 387 AACTATGCTTCTTCATCTTGGTGTCTTGACGAGTTGGTGGAGATCATGAAATGCAAAGAA 446
Query 471 AAAGTTTGGTCTAACAGTGTTTGT-AGTTTTCTAT-GAAGTTGATCCATCCCATGTTAAG 528
|| ||| ||| || |||| | | |||||||| || || ||||||||| ||||||||
Sbjct 447 GAA-TTTAGTCAAATAGTGATCCCCA-TTTTCTATAGA-GTGGATCCATCCGATGTTAAG 503
Query 529 AAGCTGACCGGAGAATTT-GG-AGCTGTCTTTCAGAAA-ACTTGTAAGGGTAGAACAAAG 585
||||| || ||| ||||| || | |||||| || ||| | |||| |||| ||| ||
Sbjct 504 AAGCTCACAGGA-AATTTTGGGAA-TGTCTT-CAAAAATAATTGTGTTGGTAAAACTAAT 560
Query 586 GAGGAGATTTGGAGATGGAGACAAGCTTTTG-AGGAAGTGGCTACAATTGCTGGTTACGA 644
|||| || ||| ||||||||||||| | | | || ||| |||| ||||||||||
Sbjct 561 GAGGTTATAAGGAAATGGAGACAAGCTCTGGCAAAAA-TGGGAACAACCACTGGTTACGA 619
Query 645 TTCAAG-AGACTGGGAAAATGAAGCTG-CCATGGTTGA 680
||| | | ||||||| |||||||| | ||||| ||||
Sbjct 620 TTCTCGCA-ACTGGGATAATGAAGC-GACCATGATTGA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118874890560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5