BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908543
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69650.1 | Symbols: | TRAF-like family protein | chr1:26197... 455 4e-127
> AT1G69650.1 | Symbols: | TRAF-like family protein | chr1:26197498-26198821
REVERSE LENGTH=885
Length=885
Score = 455 bits (246), Expect = 4e-127
Identities = 313/345 (91%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 438 TGAATGTGAGTTTGGTGTTGATGTCATTGTTTCTTCACCTCTTACCAATTGGGAAATCCT 497
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 381 TGAATGTGAGTTTGGTGTTGATGTCATTGTTGCTCCACCTCTTACCAATTGGGAAATCCT 440
Query 498 CTC-TTT--TGATGAGAAACTCTCTTATCCCAAGTTCTCTTGGAGTGTTGAGAACTTTTC 554
||| ||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 441 CTCTTTTCATGATGAGAAACTCTCTTATCCCAAGGTCACTTGGAGTGTTAAGAACTTTTC 500
Query 555 TCAGTTGAAAGAAAAGGAGTTTTACACATCAAAAAGATTTTCAATAGGAGGAAGGGAATG 614
||||| ||||||||| |||| || || | |||| ||||||||||||||||||||||||||
Sbjct 501 TCAGTGGAAAGAAAATGAGTGTTCCAAACCAAACAGATTTTCAATAGGAGGAAGGGAATG 560
Query 615 GTTTCTAGAGCTGTATCCGAGGGGCAACGCTAGAGCAAATGGCAAATATTTATCCGT-TT 673
| ||||| |||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||
Sbjct 561 GGTTCTAAAGCTGTTTCCGAAGGGCAACTCTAGAGCAAAAGGCAAATATTTATCCGTGTT 620
Query 674 ATCATAATTTAGCTGATAGTGAAACACTAAAACCAGATGAGAAGATTTTCACGCAAGTAC 733
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 621 -TCTTTATTTAGCTGATAATGAAACACTAAAACCAGATGAGAAGATTTTCACGCAAGTAG 679
Query 734 ATGTGCGAGTTCTAAACCCGCTTGGATCCAATCACTTGACA-GCC 777
||||||| |||||||||||||||||||||||||| || || |||
Sbjct 680 TTGTGCGAATTCTAAACCCGCTTGGATCCAATCACGTGGCAAGCC 724
Score = 370 bits (200), Expect = 1e-101
Identities = 302/346 (87%), Gaps = 28/346 (8%)
Strand=Plus/Plus
Query 1 ATGGGTGCATCATGCTCAGCACCAGTTTCTTCTACAATCAAGAAAAACTGGAGAGATCAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTGCATCATGCTCAGCACCAGTTTCTTCTACTATCAAGAAAAACTGGAGAGATCAT 60
Query 61 CCTCCTTCTTCTTATTCTCTCAAGATTCACAACTTCTCACAATTTGAGAATTCTACTGCC 120
|||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 61 CCTCCTTCTTCTTATTCTCTCAAGATTCACAACTTCTCCCAACTTGAGAAAACTACTTCC 120
Query 121 TTCTCTGATCATAAATACCAATCTCGCCTTTTCTCTTCTGGTGGATATAACTGGAGATTG 180
||||||| |||||||||||||||||| |||||||| ||||||| |||||||||| ||
Sbjct 121 TTCTCTGGTCATAAATACCAATCTCGTCTTTTCTCCTCTGGTG-ATATAACTGG-GA--- 175
Query 181 ATCATATATCCGAAAGGTAACGTAAAGGACAATGAAAGTGGGTTTATTTCTATGTACGTG 240
| | | ||| | |||||||| |||||| |||||||| |||||||||
Sbjct 176 A-C--------G-----TAA---A--GGACAATGGAAGTGGATTTATTTCGATGTACGTG 216
Query 241 GAATTAGACAGCACAAGCTTGACAGAATCCA--C-ACCAACTGAAGTCTTTGCGGAACTC 297
|||||||||||| ||||||||| ||||||| | |||||||||||| ||||||||||||
Sbjct 217 GAATTAGACAGCTCAAGCTTGATGGAATCCAAACCACCAACTGAAGTGTTTGCGGAACTC 276
Query 298 CGCTTCTTTGTCTACAACAAGaaa-aaaaCAAGTACTTTACTAAAG 342
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 277 CGCTTCTTTGTCTACAACAAGAAACAAAACAAGTACTTTACTAAAG 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5