BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908546
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69680.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 998 0.0
> AT1G69680.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem
II reaction center PsbP family protein | chr1:26204805-26206928
FORWARD LENGTH=1202
Length=1202
Score = 998 bits (540), Expect = 0.0
Identities = 587/610 (96%), Gaps = 2/610 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGCGAGTTGTGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 60
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ATGTCTGTTGAGTTATGTTCGGTGAGGCCTTTGTTTGGTGGCGCTATTTCCACCGTCTTC 293
Query 61 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CCTCAAAGATTTCAGGATGTGAGTAATATCCGACAAGTTCCAGATCATCAGGAAGTGTTT 353
Query 121 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGACTGAGGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 354 GTGGATCCTTCAAGAGATGAGAGTTTGATTTTTGAGTTGTTGGATTTCAAGGCTGAGGTT 413
Query 181 GGTGACATTGGCAGTGCTTCTTGGTTCCTTAACGATCTTGCTCGTGAGCAAGATGCTGAA 240
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 414 GGTGACATTGGCAGTGCCTCTTGGTTCCTTAATGATCTTGCGAGTGAGCAAGATGCTGAA 473
Query 241 GGATTTCAGTTGATAGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGATTTCAGTTGATTGAGCAATCAGAGGTCATTGAGGCGCCTGGACTGTCTTTCAGAAAC 533
Query 301 AT-TCCTGCCATTGCGACGACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAAGG 359
|| || ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 534 ATCTC-TGCTGTTGCGACAACTGCTATTGGAGAGATGGCTATATCCAAAGGAAGACAGGG 592
Query 360 AAGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATCTTCGTCTTAAGGGAGTTGA 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 AAGAGAAGCACAAAACCTAGTGAGAGTATATGTGGCAAATATTCGTCTTAAGGGAGTTGA 652
Query 420 TACAGATGTCTTAGTTACTGCGTATGAACCTATCCTGATAAACCCTCTGAGCGAAAGCGC 479
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 653 TACAGATGTCTTAGTGACTGCCTATGAACCTATCCTGATAAATCCTCTGAGCGAAAGCGC 712
Query 480 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAATTATGCCAATGTG 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 713 GGATGCTGTGGGATCTGGTTTAGCTGTCCCAGCTTCACAATCTGGAAAAATGCCAATGTG 772
Query 540 TGATGTCATTAAACAATCACTCTCTACCTTCAAAGTCAATGACTGGAATCTTTTCGGTTC 599
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 773 TGATATCATTAAACAATCACTCTCTACATTCAAAGTCAATGACTGGAATCTTTTCGGTTC 832
Query 600 CTCAGCTTGA 609
||||||||||
Sbjct 833 CTCAGCTTGA 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5