BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908555

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69750.1 | Symbols: COX19-2, ATCOX19-2 | cytochrome c oxidas...   466    5e-131
  AT1G66590.2 | Symbols: ATCOX19-1, COX19-1 | cytochrome c oxidas...   459    9e-129


> AT1G69750.1 | Symbols: COX19-2, ATCOX19-2 | cytochrome c oxidase 
19-2 | chr1:26235284-26237571 FORWARD LENGTH=1198
Length=1198

 Score =  466 bits (252),  Expect = 5e-131
 Identities = 282/297 (95%), Gaps = 0/297 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTACAGGTGGAGCGTTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAAAAA  60
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || 
Sbjct  647  ATGAGTACAGGTGGAGCATTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAGAAG  706

Query  61   GGCATTTTTCCTTTGGATCACTTGCACGAATGCGATGCGGAGAAGAAAGAATATCTTGGT  120
            |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct  707  GGCATTTTCCCTTTGGATCACTTGCACGAGTGTGATGCGGAGAAGAAAGAATATCTAGGT  766

Query  121  TGTCTTAAGTCTTCAGCTCATAAATCTGAGCAATGTAGACATCTCTCAAAGAAATATCTC  180
            |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct  767  TGTCTTAAGTCTTCAGCTCACAAATCTGAACAATGTAGACATCTCTCTAAGAAATATCTC  826

Query  181  CAGTGTCGAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  827  CAGTGTCGAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGT  886

Query  241  GGTGTCAAAGAACTCGATTCCGCTGAAGATAAGAATAAAGAGAGTATCGAACAATGA  297
            ||||| |||||||| |||||| ||||||||||||||| ||||||||||||||| |||
Sbjct  887  GGTGTTAAAGAACTTGATTCCACTGAAGATAAGAATACAGAGAGTATCGAACATTGA  943


> AT1G66590.2 | Symbols: ATCOX19-1, COX19-1 | cytochrome c oxidase 
19-1 | chr1:24841123-24842411 FORWARD LENGTH=680
Length=680

 Score =  459 bits (248),  Expect = 9e-129
 Identities = 276/290 (95%), Gaps = 0/290 (0%)
 Strand=Plus/Plus

Query  8    CAGGTGGAGCGTTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAAAAAGGCATTT  67
            |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  137  CAGGTGGAGCATTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAGAAGGGCATTT  196

Query  68   TTCCTTTGGATCACTTGCACGAATGCGATGCGGAGAAGAAAGAATATCTTGGTTGTCTTA  127
            | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  197  TCCCTTTGGATCACTTGCACGAGTGTGATGCGGAGAAGAAAGAATATCTTGGTTGTCTTA  256

Query  128  AGTCTTCAGCTCATAAATCTGAGCAATGTAGACATCTCTCAAAGAAATATCTCCAGTGTC  187
            ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  257  AGTCTTCAGCTCACAAATCTGAACAATGTAGACATCTCTCTAAGAAATATCTCCAGTGTC  316

Query  188  GAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGTGGTGTCA  247
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  317  GAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGTGGTGTTA  376

Query  248  AAGAACTCGATTCCGCTGAAGATAAGAATAAAGAGAGTATCGAACAATGA  297
            ||||||| |||||| ||||||||||||||| ||||||||||||||| |||
Sbjct  377  AAGAACTTGATTCCACTGAAGATAAGAATACAGAGAGTATCGAACATTGA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5