BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908566
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39640.1 | Symbols: GGT1 | gamma-glutamyl transpeptidase 1 |... 507 5e-143
AT1G69820.1 | Symbols: GGT3, GGT4 | gamma-glutamyl transpeptida... 497 3e-140
> AT4G39640.1 | Symbols: GGT1 | gamma-glutamyl transpeptidase 1
| chr4:18399955-18402963 FORWARD LENGTH=1969
Length=1969
Score = 507 bits (274), Expect = 5e-143
Identities = 401/462 (87%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 5 ATGTGCCGCCACCGGCACCAGCTAACTTCATCCGTCCCGGGAAACGACCTTTGTCCTCTA 64
|||| || ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1413 ATGTTCCACCACCAGCACCAGCTAACTTCATCCGTCCTGGAAAACGACCTTTGTCCTCTA 1472
Query 65 TGACACCCACCATTGTACTGAAGG-CTGGTAAAGTGAAAGCCGCGGTAGGAGCGAGCGGA 123
|| |||||||||||||||| |||| | ||||||||||||||||| || || |||||||||
Sbjct 1473 TGTCACCCACCATTGTACTCAAGGAC-GGTAAAGTGAAAGCCGCTGTGGGTGCGAGCGGA 1531
Query 124 GGAGTAAACATCATCGCCGGGACAATGGAAGTTTATTTGAATTGTATTTTCCTCAAGATG 183
|||| ||||| || |||||||||| ||||||||| |||||| | ||||||||||||||
Sbjct 1532 GGAGCCAACATTATTGCCGGGACAACGGAAGTTTACTTGAATCATTTTTTCCTCAAGATG 1591
Query 184 GATCCTCTGTCTTCCGTCTTGGCTCCAAGAATCTACCATCAGCTGATACCAAACATAGTT 243
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 1592 GATCCTCTTTCTTCCGTCTTAGCTCCAAGAATCTACCATCAGCTGATACCAAACAGAGCT 1651
Query 244 TCGTATGAAAATTGGACAACAGTGTTCAATGATCATTTCGAGGTTCCGAAAG-AGACAAG 302
||||| || || ||||||||||| |||||||||||||||||| |||| |||| | |||||
Sbjct 1652 TCGTACGAGAACTGGACAACAGTATTCAATGATCATTTCGAGATTCCTAAAGCA-ACAAG 1710
Query 303 AGTTGTCTTGGAGAAGAAAGGTCATGCCCTAAGGCCGATC-CCTGTAGGAACGATTGTTC 361
|||||| ||||||||||||||||||| |||| || || || | ||| ||||||| ||
Sbjct 1711 AGTTGTGTTGGAGAAGAAAGGTCATGTCCTATCTCCTATTGCCGG-AGGGACGATTGCTC 1769
Query 362 AATTCATAGTTCAAGAATCCAGTGCA-AATTCCAGTGGAATTAGTGAGCTTGTGGCGGTA 420
| |||||||||||||||||| ||| | || ||| |||||| |||||||||||||| ||
Sbjct 1770 AGTTCATAGTTCAAGAATCCGGTG-AGAACTCCGGTGGAAGAAGTGAGCTTGTGGCAGTT 1828
Query 421 AGTGATCCAATAAAAgggggggTTCCCTTCGGGATATTGAGA 462
|||||||| |||||| ||| |||||||| |||||||||||
Sbjct 1829 AGTGATCCTCGAAAAGGAGGG-TTCCCTTCAGGATATTGAGA 1869
> AT1G69820.1 | Symbols: GGT3, GGT4 | gamma-glutamyl transpeptidase
3 | chr1:26283125-26284236 REVERSE LENGTH=865
Length=865
Score = 497 bits (269), Expect = 3e-140
Identities = 397/457 (87%), Gaps = 16/457 (4%)
Strand=Plus/Plus
Query 2 TAAATGTGCCGCCACCGGCACCAGCTAACTTCATCCGTCCCGGGAAACGACCTTTGTCCT 61
||| |||||| ||||||||||| || || ||||| ||||| |||||||||||| |||| |
Sbjct 422 TAACTGTGCCACCACCGGCACCGGCCAATTTCATTCGTCCTGGGAAACGACCTCTGTCTT 481
Query 62 CTATGACACCCACCATTGTACTGAAGGCTGGTAAAGTGAAAGCCGCGGTAGGAGCGAGCG 121
|||||||||||||||||||||| |||| |||||||||||||||| | || || |||||||
Sbjct 482 CTATGACACCCACCATTGTACTCAAGGATGGTAAAGTGAAAGCCTCCGTGGGTGCGAGCG 541
Query 122 GAGGAGTAAACATCATCGCCGGGACAATGGAAGTTTATT-TGAATTGTATT-TTCCTCAA 179
||||| | |||||||||| ||||||| ||||||| || |||||| | || ||||||||
Sbjct 542 GAGGACTGTACATCATCGCTGGGACAACAGAAGTTT-TTCTGAATTAT-TTCTTCCTCAA 599
Query 180 GATGGATCCTCTGTCTTCCGTCTTGGCTCCAAGAATCTACCATCAGCTGATACCAAACAT 239
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGGATCCTCTTTCTTCCGTTTTGGCTCCAAGAATCTACCATCAGCTGATACCAAACAT 659
Query 240 AGTTTCGTATGAAAATTGGACAACAGTGTTCAATGATCATTTCGAGGTTCCGAAAGAGAC 299
||||||||||||||| | ||| |||||||||| ||||||||||||| |||| ||||||||
Sbjct 660 AGTTTCGTATGAAAACTAGACGACAGTGTTCAGTGATCATTTCGAGATTCCTAAAGAGAC 719
Query 300 AAGAGTTGTCTTGGAGAAGAAAGGTCATGCCCTAAGGCCGATCCCTGTAGGAACGATTGT 359
||||||||| ||||||||||||||||||| ||||| | | || | | | |||||||
Sbjct 720 AAGAGTTGTGTTGGAGAAGAAAGGTCATGTCCTAA--C-G--CC-T--A--A-CGATTGT 768
Query 360 TCAATTCATAGTTCAAGAATCCAGTGCAAATTCCAGTGGAATTAGTGAGCTTGTGGCGGT 419
||| ||||||||||||||||| |||||| ||| ||||||| ||||| |||||||| ||
Sbjct 769 TCAGTTCATAGTTCAAGAATCTGGTGCAAGTTCTGGTGGAATGAGTGACCTTGTGGCAGT 828
Query 420 AAGTGATCCAATAAAAgggggggTTCCCTTCGGGATA 456
||||||||||| ||| ||| ||||||||||| |||||
Sbjct 829 AAGTGATCCAAGAAA-GGGAGGGTTCCCTTCAGGATA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5