BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908584
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70020.1 | Symbols: | Protein of unknown function (DUF1163)... 734 0.0
AT1G69981.1 | Symbols: | Pseudogene of AT1G70020 | chr1:263580... 185 4e-46
> AT1G70020.1 | Symbols: | Protein of unknown function (DUF1163)
| chr1:26377370-26378359 FORWARD LENGTH=884
Length=884
Score = 734 bits (397), Expect = 0.0
Identities = 596/689 (87%), Gaps = 25/689 (4%)
Strand=Plus/Plus
Query 1 ATGGATTATGGAAACGGAG-AAT--TAGCTCCCAACCCCACCTCTTTATGTGCTAGGCTT 57
|||||||||| |||||||| ||| ||||||| || ||||| ||||||| | ||| |||
Sbjct 1 ATGGATTATGAAAACGGAGAAATAATAGCTCCTAAATCCACCACTTTATGGGATAGACTT 60
Query 58 ACACCACAACAAAAAGA-CA-GAGTACA-GAAAAT-TATCGTCCTATGTTGCATCGCTAT 113
||||||| ||||||| | | | || || | | | | || | | ||| ||||||||
Sbjct 61 ACACCACGACAAAAAAAGTATGTGTTCACGTGTGTCT-TGGT--TTTTTTG-ATCGCTAT 116
Query 114 CTTC-GTCGC-GGTATTCATCACTTATGTCTGCT-TTTATGAAGCACAA-ATCCGACGTG 169
| | ||| | ||| ||| ||||| || || | || ||||||| | |||||||
Sbjct 117 C-GCAACCGCTGCAATT-ATCGTTTATGCCTACTCTGAAT-CAGCACAAGA-ACGACGTG 172
Query 170 AAAAACGGCGTGAAGAACAACGTATAAG-AAATTATGCACCGGATATTATAATACCATCT 228
||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 173 AAAAACGGCGTAAAGAACAACGTAT-AGAAAACTATGCACCGGATATTATAATACCATCT 231
Query 229 ATGGATTTCACGGTGCTTAATTTAACAGAGACTAGTCTTAGTGTTAAATGGGATTTAGTG 288
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 232 ATGGATTTCACAGTCCTTAATTTAACCGAGACTAGTCTTAGTGTTAAATGGGATTTAGTG 291
Query 289 ATCAGACTTCCTTCAGACCTTCCTGGTTACTATATGTGTCTCAAAGGAGATTTTCAGACT 348
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 292 ATCAGGCTTCCTTCAGATCTTCCTGGTTACTATATGTGTCTCAAAGGAGATTTGCAGACT 351
Query 349 TTCATACTCTACAAAGGTGTTACCATTGCTAATTCGTCTTTAGACAGTTACAGTTTGATA 408
|||||||| |||||||||||||||||||||||||| || ||||||||||||| | |||||
Sbjct 352 TTCATACTTTACAAAGGTGTTACCATTGCTAATTCATCCTTAGACAGTTACAATCTGATA 411
Query 409 CCAAATTGGCCTCAGCTGCTTAATACCTCCTCATTGGTTGCTTCCGAGAGAGATATGGAC 468
||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||
Sbjct 412 CCAAATTGGCCTCAGCTGCTTAATACCTCATCGGTAATTGCTTCTGAGGGAGATATGGAC 471
Query 469 AATGTGGTTGTGCATGACATTATGGAGGATATTAAGGAAAGAAGAGACATGCGGTTCGGA 528
| ||| |||||| | ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 472 AGTGTTGTTGTGAAAGACATTATGGACGATATAAAGGAAAGAAGAGACATGCGGTTCGGA 531
Query 529 TC-ACGATTTCTTCTTCCGGATTGTAGATCTGGGAGGAAGATGAACTATACGTGTGATGA 587
|| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TCGA-GGTTGCTTCTTCCGGATTGTAGATCTGGGAGGAAGATGAACTATACGTGTGATGA 590
Query 588 AACCGCG-TTACGGTTTGAGCCTGGCTCTCAAAGGAAGGCAACTGAGTTTCAAAAAGCCT 646
||| ||| || |||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 591 AACTGCGGTT-CGGTTTGAGCCTGGCTCTCAAAGGAAGGCAACTGCGTTTGAAAACGCCG 649
Query 647 CTCCTATATGCCACTATAATCACCCTTAA 675
|||||||||||||||||| |||| |||||
Sbjct 650 CTCCTATATGCCACTATATTCACACTTAA 678
> AT1G69981.1 | Symbols: | Pseudogene of AT1G70020 | chr1:26358097-26358402
REVERSE LENGTH=306
Length=306
Score = 185 bits (100), Expect = 4e-46
Identities = 130/143 (91%), Gaps = 7/143 (5%)
Strand=Plus/Plus
Query 190 CGTAT-AAGAAATTATGCA-CCGGATATTATAATACCATCTATGGATTTCACGGTGCTTA 247
||||| || |||||||| | |||||||||||||||||||||||||||||||| || ||||
Sbjct 160 CGTATGAA-AAATTATG-ATCCGGATATTATAATACCATCTATGGATTTCACAGTCCTTA 217
Query 248 ATTTAACAGAGACTAGTCTTAGTGTTAAATGGGATTTAGTGATCAGACTTCCTTCAGACC 307
||||||| |||||||| ||||||||||||||||||||||||||| ||||||| | |||
Sbjct 218 ATTTAACCGAGACTAG---TAGTGTTAAATGGGATTTAGTGATCAGGCTTCCTTTAAACC 274
Query 308 TTCCTGGTTACTATATGTGTCTC 330
|||||||||||||||||||||||
Sbjct 275 TTCCTGGTTACTATATGTGTCTC 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5