BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908588
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
AT3G31442.1 | Symbols: SADHU7-2 | transposable element gene | c... 111 3e-24
AT3G31440.1 | Symbols: | transposable element gene | chr3:1280... 111 3e-24
> AT3G31442.1 | Symbols: SADHU7-2 | transposable element gene |
chr3:12803911-12804796 REVERSE LENGTH=886
Length=886
Score = 111 bits (60), Expect = 3e-24
Identities = 211/281 (75%), Gaps = 22/281 (8%)
Strand=Plus/Minus
Query 1 ATGGGCTTGGGCCGAA-TCTAC-AA-AAGTCCAATCCAGTTACAAAAAAGGAAATCGGCA 57
|||||||||||||||| |||| || || | |||||||||||||| ||||||||||
Sbjct 844 ATGGGCTTGGGCCGAAGCCTACAAACAAAAACGATCCAGTTACAAAATGGGAAATCGGC- 786
Query 58 AT-TCACCGGAAAAAC-AAAAGAGGTTCGCCGTTTGTTGATAGAT-GCCCGCAGAGCAAC 114
|| || | || ||||| |||| | | |||||| |||||| | | || ||||||| ||
Sbjct 785 ATCTCGCTGG-AAAACGAAAAAAAGATCGCCGCCTGTTGACCG-TCGCTAGCAGAGCGAC 728
Query 115 CGGAA-CCTGAAATCCGGCGGGCTCAAGATCCACTGTTTTGTGGCTACAACCGAAGACCG 173
| || | | | ||||||||| ||||||| |||| | |||||||| | | ||| |
Sbjct 727 C-AAAGCTTTAGATCCGGCGGACTCAAGACCCACCGCTTTGTGGCCGCCTCGGAA-A-AT 671
Query 174 TGA--AATTTCGGCGAAAGAGACCGGTTTCCGCCA-TCCA-T-TACATGCCTCCGACGAA 228
||| || || ||||||| ||||||| || || | | | || ||| |||| |
Sbjct 670 TGACCAA-ACCGACGAAAGATTCCGGTTTTCGTCAGAAAAGTCT-CA--ACTCTGACGCA 615
Query 229 CCAGCCCACCACAAGTCTCCCGGAAAGCTAGTCACTCCGAC 269
||| |||||||||||||||||||||||||||||||||||||
Sbjct 614 CCAACCCACCACAAGTCTCCCGGAAAGCTAGTCACTCCGAC 574
> AT3G31440.1 | Symbols: | transposable element gene | chr3:12800324-12806091
REVERSE LENGTH=5768
Length=5768
Score = 111 bits (60), Expect = 3e-24
Identities = 211/281 (75%), Gaps = 22/281 (8%)
Strand=Plus/Minus
Query 1 ATGGGCTTGGGCCGAA-TCTAC-AA-AAGTCCAATCCAGTTACAAAAAAGGAAATCGGCA 57
|||||||||||||||| |||| || || | |||||||||||||| ||||||||||
Sbjct 2139 ATGGGCTTGGGCCGAAGCCTACAAACAAAAACGATCCAGTTACAAAATGGGAAATCGGC- 2081
Query 58 AT-TCACCGGAAAAAC-AAAAGAGGTTCGCCGTTTGTTGATAGAT-GCCCGCAGAGCAAC 114
|| || | || ||||| |||| | | |||||| |||||| | | || ||||||| ||
Sbjct 2080 ATCTCGCTGG-AAAACGAAAAAAAGATCGCCGCCTGTTGACCG-TCGCTAGCAGAGCGAC 2023
Query 115 CGGAA-CCTGAAATCCGGCGGGCTCAAGATCCACTGTTTTGTGGCTACAACCGAAGACCG 173
| || | | | ||||||||| ||||||| |||| | |||||||| | | ||| |
Sbjct 2022 C-AAAGCTTTAGATCCGGCGGACTCAAGACCCACCGCTTTGTGGCCGCCTCGGAA-A-AT 1966
Query 174 TGA--AATTTCGGCGAAAGAGACCGGTTTCCGCCA-TCCA-T-TACATGCCTCCGACGAA 228
||| || || ||||||| ||||||| || || | | | || ||| |||| |
Sbjct 1965 TGACCAA-ACCGACGAAAGATTCCGGTTTTCGTCAGAAAAGTCT-CA--ACTCTGACGCA 1910
Query 229 CCAGCCCACCACAAGTCTCCCGGAAAGCTAGTCACTCCGAC 269
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1909 CCAACCCACCACAAGTCTCCCGGAAAGCTAGTCACTCCGAC 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13723095477
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5