BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908599

Length=1179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70150.1 | Symbols:  | zinc ion binding | chr1:26416898-2641...  1225    0.0  


> AT1G70150.1 | Symbols:  | zinc ion binding | chr1:26416898-26419588 
FORWARD LENGTH=1192
Length=1192

 Score = 1225 bits (663),  Expect = 0.0
 Identities = 943/1070 (88%), Gaps = 52/1070 (5%)
 Strand=Plus/Plus

Query  1     ATGGAGTGTGCCGCGCGTGGGTTTGCAACGCGGTGCGTTGGTCCACCGACGCGGAGGTGT  60
             |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  1     ATGGAGTGTGCCGCGCGTGGTTTTGCGACGCGGTGTGTTGGTCCACCGACGCGGAGGTGT  60

Query  61    GGCCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCACATTGGAGCTAT  120
             || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61    GGTCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCGCATTGGAGCTAT  120

Query  121   CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTGTTAAATGAT  180
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121   CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTTTTAAATGAT  180

Query  181   TTTCCATTTACATTTACAGAAGAAGCTACGGTTCAGGTTAGTCAAAAACATGAGACTAGG  240
             |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  181   TTTCCATTTACATTTACAGAAGAAGCTACAATTCAGGTTAGTCAAAAACATGAGACTAGG  240

Query  241   TGCTCGTTTC-TCTGT-AA-ACGGGAGTTACATCGTGTTGGAATGTGGATGTATGAATGT  297
             |||||| ||| ||  | || | |||| ||||||||||||||||||||||||||||| |||
Sbjct  241   TGCTCG-TTCTTC-ATCAAGAGGGGA-TTACATCGTGTTGGAATGTGGATGTATGAGTGT  297

Query  298   AACTGTGGAGCTTCTGCCGGTTTTTCGGCTTTCGATAGTTTTAATAATGACGGTTGGCAT  357
             |||||||||      | |    ||| |||||| ||||||||||||| ||| || ||||||
Sbjct  298   AACTGTGGA------G-C----TTT-GGCTTTTGATAGTTTTAATATTGAAGGGTGGCAT  345

Query  358   CTT-CCGAGCTCTTCTTGTCCATGTCGCGGTCCTTTATCTCCAGTTACAAAACTGCTATG  416
              || ||||||||||||||||||||||| || |||||||||||| | || |||| ||||||
Sbjct  346   -TTGCCGAGCTCTTCTTGTCCATGTCGTGGGCCTTTATCTCCAATAACTAAACAGCTATG  404

Query  417   TAGTTGGACTGATTATTTCGAATGGAGAAAGATACCTCTTGATTCTCCTGTGGCTCTACT  476
             || |||||  ||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||
Sbjct  405   TACTTGGAAGGATTATTTCGAGTGGAGAAAGTTACCTCTAGATTCACCTGTAGCTCTACT  464

Query  477   TCTCCACTGGAGCTTGCTGTTATTTCAGCCACTTACGATATATCATGCAATTCAAGCCAT  536
             ||| | |   |     |||        |||||||||||||||||||||| ||||||||||
Sbjct  465   TCT-C-C---A-----CTG--------GCCACTTACGATATATCATGCAGTTCAAGCCAT  506

Query  537   TGGGTTGGGAAATTTAACTCCCCAAATAAGTAATGAACTTCGTATACATTATCTTGGCCC  596
             |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  507   TGGGATGGGAAATTTGACTCCCCAAATAAGTGATGAACTTCGTATACATTATCTTGGGCC  566

Query  597   TCAGAAAGAGCTTGGCCAACTTGGTGTCTTCACTGAGCTGCAAGCCCTCTTCCCTGGTCT  656
             |||||| || ||||| ||||||||||| ||  ||||||||||||| ||||||||||||||
Sbjct  567   TCAGAAGGAACTTGGGCAACTTGGTGTTTTTGCTGAGCTGCAAGCGCTCTTCCCTGGTCT  626

Query  657   GCGCATACACGTAGAGCTTG-TTGGACCTGACGTTCCACAACATATGGATGGAGAGATGA  715
             ||||||  | |||||  ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  627   GCGCATTTATGTAGA-TTTGATTGGACCTGACGTTCCACAACATATGGATGGAGAAATGA  685

Query  716   TCTCACTTAGCAGATATTCCCCTTGCAT-GGAAGAAGAATGCGAATGTAATTATTCAAGT  774
             |||| ||| ||||||||||||||||||| |||| ||||||| ||||||||  ||||||| 
Sbjct  686   TCTCCCTTTGCAGATATTCCCCTTGCATGGGAA-AAGAATGTGAATGTAAAAATTCAAGC  744

Query  775   GAAA---T---TTCCGGTAGCGAATCTGC-CTGGTCTTCAGCTGTGTCGTTACAGCTCCA  827
              |||   |   |||||| ||| || ||||  |||| ||| |||||||| |||||||||| 
Sbjct  745   AAAATTCTCAATTCCGGGAGCAAACCTGCTTTGGT-TTCGGCTGTGTCATTACAGCTCCG  803

Query  828   TAGAGGGTTTTACCATGATCTTTACACCGACATAACAAAGAATTCACCTCCTCCTCACAT  887
             |||||||||||||||||||| |||||  |||||||||||| |||||  |||||| |||||
Sbjct  804   TAGAGGGTTTTACCATGATCGTTACAATGACATAACAAAGGATTCATTTCCTCCACACAT  863

Query  888   AGTGATTGCTCCAAACGCCGGCGTCGCAGCATATCCAAGTTGGTTGCCAACTATTGAACT  947
             |||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||
Sbjct  864   AGTGATTGCTCCAAACGCAGGCATCGCTGCATATCCAAGCTGGTTGCCAACTATTGAACT  923

Query  948   GATAAAGGAGATA-AGAGTGCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC  1006
             ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  924   GATAAAGGAGATACA-AGTCCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC  982

Query  1007  TGGCGGCTTGTTGCATTAAAACCATCACAGGACAACCTATATCATTACCT  1056
             |||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct  983   TGGCTGCTTGTTGCATTAAAACCATCACAGGACAACCTCTATCATCACCT  1032



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57881228385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5