BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908599
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70150.1 | Symbols: | zinc ion binding | chr1:26416898-2641... 1225 0.0
> AT1G70150.1 | Symbols: | zinc ion binding | chr1:26416898-26419588
FORWARD LENGTH=1192
Length=1192
Score = 1225 bits (663), Expect = 0.0
Identities = 943/1070 (88%), Gaps = 52/1070 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTGTGCCGCGCGTGGGTTTGCAACGCGGTGCGTTGGTCCACCGACGCGGAGGTGT 60
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGTGTGCCGCGCGTGGTTTTGCGACGCGGTGTGTTGGTCCACCGACGCGGAGGTGT 60
Query 61 GGCCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCACATTGGAGCTAT 120
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GGTCAGTGTGGTGCTGTAGCTTATTGCTCCGTCTCTCATCAGATTTCGCATTGGAGCTAT 120
Query 121 CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTGTTAAATGAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CACAAGGAAGAATGTGAGAGATTAGAAGAGCAAATGCGTCGTGTTGATCTTTTAAATGAT 180
Query 181 TTTCCATTTACATTTACAGAAGAAGCTACGGTTCAGGTTAGTCAAAAACATGAGACTAGG 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TTTCCATTTACATTTACAGAAGAAGCTACAATTCAGGTTAGTCAAAAACATGAGACTAGG 240
Query 241 TGCTCGTTTC-TCTGT-AA-ACGGGAGTTACATCGTGTTGGAATGTGGATGTATGAATGT 297
|||||| ||| || | || | |||| ||||||||||||||||||||||||||||| |||
Sbjct 241 TGCTCG-TTCTTC-ATCAAGAGGGGA-TTACATCGTGTTGGAATGTGGATGTATGAGTGT 297
Query 298 AACTGTGGAGCTTCTGCCGGTTTTTCGGCTTTCGATAGTTTTAATAATGACGGTTGGCAT 357
||||||||| | | ||| |||||| ||||||||||||| ||| || ||||||
Sbjct 298 AACTGTGGA------G-C----TTT-GGCTTTTGATAGTTTTAATATTGAAGGGTGGCAT 345
Query 358 CTT-CCGAGCTCTTCTTGTCCATGTCGCGGTCCTTTATCTCCAGTTACAAAACTGCTATG 416
|| ||||||||||||||||||||||| || |||||||||||| | || |||| ||||||
Sbjct 346 -TTGCCGAGCTCTTCTTGTCCATGTCGTGGGCCTTTATCTCCAATAACTAAACAGCTATG 404
Query 417 TAGTTGGACTGATTATTTCGAATGGAGAAAGATACCTCTTGATTCTCCTGTGGCTCTACT 476
|| ||||| ||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||
Sbjct 405 TACTTGGAAGGATTATTTCGAGTGGAGAAAGTTACCTCTAGATTCACCTGTAGCTCTACT 464
Query 477 TCTCCACTGGAGCTTGCTGTTATTTCAGCCACTTACGATATATCATGCAATTCAAGCCAT 536
||| | | | ||| |||||||||||||||||||||| ||||||||||
Sbjct 465 TCT-C-C---A-----CTG--------GCCACTTACGATATATCATGCAGTTCAAGCCAT 506
Query 537 TGGGTTGGGAAATTTAACTCCCCAAATAAGTAATGAACTTCGTATACATTATCTTGGCCC 596
|||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 507 TGGGATGGGAAATTTGACTCCCCAAATAAGTGATGAACTTCGTATACATTATCTTGGGCC 566
Query 597 TCAGAAAGAGCTTGGCCAACTTGGTGTCTTCACTGAGCTGCAAGCCCTCTTCCCTGGTCT 656
|||||| || ||||| ||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 567 TCAGAAGGAACTTGGGCAACTTGGTGTTTTTGCTGAGCTGCAAGCGCTCTTCCCTGGTCT 626
Query 657 GCGCATACACGTAGAGCTTG-TTGGACCTGACGTTCCACAACATATGGATGGAGAGATGA 715
|||||| | ||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 627 GCGCATTTATGTAGA-TTTGATTGGACCTGACGTTCCACAACATATGGATGGAGAAATGA 685
Query 716 TCTCACTTAGCAGATATTCCCCTTGCAT-GGAAGAAGAATGCGAATGTAATTATTCAAGT 774
|||| ||| ||||||||||||||||||| |||| ||||||| |||||||| |||||||
Sbjct 686 TCTCCCTTTGCAGATATTCCCCTTGCATGGGAA-AAGAATGTGAATGTAAAAATTCAAGC 744
Query 775 GAAA---T---TTCCGGTAGCGAATCTGC-CTGGTCTTCAGCTGTGTCGTTACAGCTCCA 827
||| | |||||| ||| || |||| |||| ||| |||||||| ||||||||||
Sbjct 745 AAAATTCTCAATTCCGGGAGCAAACCTGCTTTGGT-TTCGGCTGTGTCATTACAGCTCCG 803
Query 828 TAGAGGGTTTTACCATGATCTTTACACCGACATAACAAAGAATTCACCTCCTCCTCACAT 887
|||||||||||||||||||| ||||| |||||||||||| ||||| |||||| |||||
Sbjct 804 TAGAGGGTTTTACCATGATCGTTACAATGACATAACAAAGGATTCATTTCCTCCACACAT 863
Query 888 AGTGATTGCTCCAAACGCCGGCGTCGCAGCATATCCAAGTTGGTTGCCAACTATTGAACT 947
|||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 864 AGTGATTGCTCCAAACGCAGGCATCGCTGCATATCCAAGCTGGTTGCCAACTATTGAACT 923
Query 948 GATAAAGGAGATA-AGAGTGCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC 1006
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GATAAAGGAGATACA-AGTCCCAGCAGTATTCTCTGATTACTGTGAAGAAGCTTGTCATC 982
Query 1007 TGGCGGCTTGTTGCATTAAAACCATCACAGGACAACCTATATCATTACCT 1056
|||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 983 TGGCTGCTTGTTGCATTAAAACCATCACAGGACAACCTCTATCATCACCT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5