BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908608
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70230.1 | Symbols: TBL27 | TRICHOME BIREFRINGENCE-LIKE 27 |... 1676 0.0
> AT1G70230.1 | Symbols: TBL27 | TRICHOME BIREFRINGENCE-LIKE 27
| chr1:26450245-26451945 FORWARD LENGTH=1616
Length=1616
Score = 1676 bits (907), Expect = 0.0
Identities = 1153/1269 (91%), Gaps = 27/1269 (2%)
Strand=Plus/Plus
Query 1 ATGGGATTGAAA-GAGCAACGAAATTG-TCTAAGTCAGAGGAAGATTATAGTTTTTATAG 58
|||||||| ||| ||||||| ||| || || ||||||||||||||| |||||||||||||
Sbjct 145 ATGGGATT-AAACGAGCAAC-AAAATGTTCCAAGTCAGAGGAAGATCATAGTTTTTATAG 202
Query 59 TCTTGGCTTTTATACCAATAGCTCTGTTTCGACTCTGTTTTACTAATCCTTTCTCCGCCA 118
|||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 203 TCTTAGCTTTTATACCAATAGCTCTGTTTCGACTCTGTTTTAATAATCCATTCTCCTCCA 262
Query 119 TTGATGACACCTCTCTTCAAGAATCTGCAGCTCACGTTGTGATCACCAGCTACTCTTCTT 178
|| | ||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| |
Sbjct 263 TTAAAGACACCTCTCTTCAAGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCAT 322
Query 179 CTTCTCAAGAAGAAGAAA-CTCAAGAGAGTTTTGATCATATA-AAGGAGGAAAATTTATG 236
|||||||||||||||||| | ||||||||||||||||||||| || || ||| ||||||
Sbjct 323 CTTCTCAAGAAGAAGAAAGC-CAAGAGAGTTTTGATCATATACAA-GATGAACCTTTATG 380
Query 237 CGATTATACACAAGGAAAATGGGTCAGAGACGAGATTGGTCCACTCTACAATGGTTCGAC 296
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 381 CGATTATACGCAAGGGAACTGGGTCAGAGACGAGATTGGTCCACTCTACAATGGTTCAAC 440
Query 297 CTGTGGAACAATCAAGGAAGGTCAAAACTGTTTCCGCCATGGTAGACCTGATTCCGGTTA 356
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 441 ATGTGGAACAATCAAGGATGGTCAGAATTGTTTCCGCCATGGTAGACCTGATTCCGGTTA 500
Query 357 TCTTTATTGGAAATGGAAACCGAACCAATGCGATATACCGAGATTTGACGCGAACCGGTT 416
|||||| |||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||
Sbjct 501 TCTTTACTGGAAATGGAAACCAAACGAATGCGATATACCGAGATTCGACTCGAACCGGTT 560
Query 417 TCTTGATCTTATGAAAGACAAGCATCTAGCTTTTATTGGTGATTCCATGGCTAGAAATCA 476
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 561 TCTTGATCTTATGAGAGATAAGCATCTAGCTTTTATCGGTGATTCCATGGCTAGAAATCA 620
Query 477 GCTTGAGTCTCTTATCTGCTTGCTCTCTACTGTCTCTAGCCCTGATCTCGTGTATAGAAA 536
||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 621 GCTTGAGTCTCTTTTATGCTTGCTCTCTACCGTCTCTAGCCCTGATCTCGTCTATAGAAA 680
Query 537 CGGAGAAGACAATAAATTCAGAAAG-TGGCGTTTCGAGTCACACAACGTCACGGTCTCGG 595
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 681 CGGAGAAGACAATAAATTCAG-AAGATGGCGTTTCGAGTCACACAACGTCACTGTCTCGG 739
Query 596 TTTACTGGTCCCCATTTTTGGTGGCCGGTTTAGAGAAATCAGGAAACTTGGACCACAATG 655
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 740 TTTACTGGTCCCCGTTTTTGGTGGCCGGTTTAGAGAAATCGGGAAACTTGGACCACAATG 799
Query 656 TATTGCACTTAGACCGCGTGGATGAGAGATGGGGCAATGATATAGAACGTATTGATACGG 715
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 800 TATTGCACATAGACCGCGTGGATGAGAGATGGGGCAATGATTTAGAACGTTTTGATACGG 859
Query 716 TCGTAGTCTCTGTGGGACATTGGTTTCTGCATCCGGCGGTTTATTATGAGTCCGGTTCGG 775
|||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||
Sbjct 860 TCGTAGTCTCTGTGGGACATTGGTTTCTGCATCCAGCGGTTTACTACGAGTCTGGTTCGG 919
Query 776 TTTTGGGATGTCATTCTTGTGAAGCAAGCAACTGTACCGAGGTAGGGTTCTACGATGTGT 835
||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||| |
Sbjct 920 TTTTGGGATGTCATTCTTGTGAAACAAGTAACTGTACCGAGGTAGGGTTTTATGATGTAT 979
Query 836 TTAGAAAAGCGATAAGAACAACGTTGA-AGGCAGTGG-TCGGAGGCCGCCGTGAGGTGAT 893
||||||||||||||||||||||||||| || | || | | ||| | | |||||||||||
Sbjct 980 TTAGAAAAGCGATAAGAACAACGTTGAGAG-CGGTTGCT-GGAAGTGGTCGTGAGGTGAT 1037
Query 894 CTTGACGACGTTTTCGCCGTCACATTTCGAAGGCCGGCCTTGGGACAGTCTCGGCGCATG 953
||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1038 CTTGACGACATTTTCGCCATCACATTTTGAAGGACGGCCTTGGGACAGTCTCGGCGCATG 1097
Query 954 TAACATGACCGAGCCATACGAAGGGAAGGTGTTAGAAGGTTTGGACTTGGATATGCGGCA 1013
|||||||||| |||| |||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 1098 TAACATGACCAAGCCGTACGAAGGGAAGGTTTTAGAAGGTCTGGACTTGGACATGCG-CA 1156
Query 1014 GA-TAGAAATGGAGGAATTTACTGCGGCCAAAGCGGCGGCCGGGGAGATGAGGTTA-ACG 1071
| ||||||| ||||||| ||| ||||| ||||| | || |||||||| | |
Sbjct 1157 AAATAGAAATTGAGGAATATACGGCGGCT---GCGGCTGA-GG-----TGAGGTTAGA-G 1206
Query 1072 GCGTTGGACGTGACGGCGATGTCGGTGTTGAGACCAGACGGACATCCTGGTCCGTATATG 1131
| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 1207 GTGTTGGACGTGACGGCTATGTCGGTACTGAGACCAGACGGACATCCTGGTCCGTACATG 1266
Query 1132 TACTCATTTCCGTTCAAGAACGGTGTGCCGGAGAGAGTTCATAATGATTGTTTGCATTGG 1191
||| | ||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 1267 TACGCGGACCCGTTCAAGAACGGTGTACCGGAGAGAATTCCTAATGATTGTTTGCATTGG 1326
Query 1192 TGTCTGCCTGGTCCGGTCGACACGTGGAACGAGATCATGATCGAGATGTTGCGGCGATGG 1251
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TGTCTACCTGGTCCTGTCGACACGTGGAACGAGATCATGATCGAGATGTTGCGGCGATGG 1386
Query 1252 AAGGTTTAA 1260
|||||||||
Sbjct 1387 AAGGTTTAA 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5