BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908617
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59930.1 | Symbols: | MADS-box family protein | chr1:220610... 156 1e-37
AT1G59920.1 | Symbols: | MADS-box family protein | chr1:220594... 156 1e-37
AT1G65300.1 | Symbols: PHE2, AGL38 | AGAMOUS-like 38 | chr1:242... 56.5 2e-07
> AT1G59930.1 | Symbols: | MADS-box family protein | chr1:22061083-22061481
REVERSE LENGTH=399
Length=399
Score = 156 bits (84), Expect = 1e-37
Identities = 145/174 (83%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 1 ATGTGGGGTTGTCTTAAAGGGGA-GATTGATGTGCATCGACTCGGCGTAAAGGATCTTCA 59
|||||||||||| | || || | ||||||||| || |||||| | ||||||||||||
Sbjct 100 ATGTGGGGTTGTATCGAA-GGAACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCA 158
Query 60 AGATTTGAGTTCGGTTATTGAAAACTATCCCAATA-CTGTTACTAGCAGGATTAAG-AGC 117
|||||||||||| |||||||| |||||| | ||| | ||| ||||||||| || | |
Sbjct 159 AGATTTGAGTTCTGTTATTGATGACTATCTCGATAGC-CTTAAAAGCAGGATTGAGTA-C 216
Query 118 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCCCCTCTTGTTGTTCCAGAT 171
||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||
Sbjct 217 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCTCCTCGTGTTCTTCAAGAT 270
> AT1G59920.1 | Symbols: | MADS-box family protein | chr1:22059424-22059822
REVERSE LENGTH=399
Length=399
Score = 156 bits (84), Expect = 1e-37
Identities = 145/174 (83%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 1 ATGTGGGGTTGTCTTAAAGGGGA-GATTGATGTGCATCGACTCGGCGTAAAGGATCTTCA 59
|||||||||||| | || || | ||||||||| || |||||| | ||||||||||||
Sbjct 100 ATGTGGGGTTGTATCGAA-GGAACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCA 158
Query 60 AGATTTGAGTTCGGTTATTGAAAACTATCCCAATA-CTGTTACTAGCAGGATTAAG-AGC 117
|||||||||||| |||||||| |||||| | ||| | ||| ||||||||| || | |
Sbjct 159 AGATTTGAGTTCTGTTATTGATGACTATCTCGATAGC-CTTAAAAGCAGGATTGAGTA-C 216
Query 118 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCCCCTCTTGTTGTTCCAGAT 171
||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||
Sbjct 217 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCTCCTCGTGTTCTTCAAGAT 270
> AT1G65300.1 | Symbols: PHE2, AGL38 | AGAMOUS-like 38 | chr1:24254929-24255765
FORWARD LENGTH=837
Length=837
Score = 56.5 bits (30), Expect = 2e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 297 TGATGTTTGTGCTCCTAACATCACCAATAATCT 329
|||||||||||||||||||||||||||| ||||
Sbjct 801 TGATGTTTGTGCTCCTAACATCACCAATGATCT 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5