BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908619
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70340.1 | Symbols: | Plant protein of unknown function (DU... 2279 0.0
> AT1G70340.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr1:26503961-26506613 REVERSE LENGTH=2363
Length=2363
Score = 2279 bits (1234), Expect = 0.0
Identities = 1443/1542 (94%), Gaps = 21/1542 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCTTTAGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATC 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ATGGCAGCTTTGGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATT 284
Query 61 AAACCAACTAGAGAGCACCGGAGCTCTATGTTACAGGTCACAGATATCGTCCCCATAGGT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
Sbjct 285 AAACCAACTAGAGAGCACCGAAGCTCTATGTTACAGGTCACAGATATCGTTCCCATTGAT 344
Query 121 CTCGACGAGAAGTCTCTGGAGCCGAAACAAGGGTTTCTCATCAAAGTCTCTGATTCCTCT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 345 CTCGACGAGAAGTCTCTGGAGCCGAAACAAGGGTTTCTCATCAAAATCTCTGATTCCTCT 404
Query 181 CACTCAATCTATGTCTCACTTCCTTCAGACCAAGACGACGTCGTTCTCAGCAATAAGATG 240
||||| ||||| ||||| || ||||| || ||||||||||||||||||||||||||| ||
Sbjct 405 CACTCGATCTACGTCTCTCTCCCTTCGGATCAAGACGACGTCGTTCTCAGCAATAAGTTG 464
Query 241 CAGCTT-GGTCAGTTTATCTACGTCGATCGGCTCGAACCTGGATCCCCTGTTCCTGTCAT 299
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 465 CAG-TTGGGTCAGTTTATCTACGTTGATCGGCTCGAACCTGGATCCCCTGTTCCTGTCAT 523
Query 300 TAAAGGCGCAAAACCAATCCCTGGTCGGCACCCAC-TGCTTGGGACGCCGGAGCCATTGA 358
|||||| |||||||| || ||||| |||||||| | ||||||||||||||||| |||||
Sbjct 524 TAAAGGGGCAAAACCCATACCTGGCCGGCACCC-CTTGCTTGGGACGCCGGAGACATTGG 582
Query 359 TGGGTCCGAAAGGAAGATCTGATCAAGAGATTGGGTCGAAGCCTAGAAGAGGATCTTGGG 418
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TGGTTCCGAAAGAAAGAACTGATCAAGAGATTGGGTCGAAGCCTAGAAGAGGATCTTGGG 642
Query 419 GACAAAACGTCGACGTTTCTTCGTCTCCGTTTGTTGTGAAACCAATGCCGTTGGATTTTG 478
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 643 GACAAAACGTCGACTTTTCTTCGTCTCCGTTTGTTGTGAAACCAATGGCGTTGGAGTTTG 702
Query 479 ATCATTCCACACCGGTGAAGAGGTCTGTTTCAGCTAGATTCGCAGCGTCTCCGATCAGAA 538
| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 703 ACCATTCCACGCCGGCGAAGAGGTCTGTTTCAGCTAGATTTGCAGCGTCTCCGATCAGAA 762
Query 539 GAGGTGGAGTGAGATGCTCTTTTGGTGGAGGGGTTTTGGGGAAAATGGAAGGAGAGAGTC 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 763 GAGGTGGAGTGAGATGCTCTTTTGGTGGAGGGGTTTTGGGGAAATTGGAAGGAGAGAGTC 822
Query 599 CGGCGACGGCGATGCTGAGGAAGAGTTGTTTTGTTTCGTCGGCTTCGAAGTTTCCGAGAA 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CGGCGACGGCGATGCTAAGGAAGAGTTGTTTTGTTTCGTCGGCTTCGAAGTTTCCGAGAA 882
Query 659 GTAGAAGTGTTTGTGACAGAGAGGCTAAAAGGAACAATGCTTCTCTTTTTAGTCCCTTCA 718
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 883 GTAGAAGTGTTTGTGACAGACAGGCCAAAAAGAACAATGCTTCTCTTTTTAGTCCCTTCA 942
Query 719 AATTCTCTCTAGAGGCTCAAGAAGATGTTGTCCCCTTGTCTACCTCGAAAACTAAGACGA 778
||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 943 AATCCTCTCTAGAGGCTCAAGAAGATGTTGTTCCCTTGTCTACCTCG------AAGAAGA 996
Query 779 GAAAACCCGAGAAAGATACCAATTTACCAGGAAGGCTCAACACACTAAGCAAGGAAGCAA 838
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 997 TAAAACCCGAGAAAGATACCAATTTATCAGGAAGGCTCAACATACTAAGCAAGGAAGCAA 1056
Query 839 CTCAGCTTCGAGAGGCAGCTCAGAAGGTTGCCCTTCAGGCATTGCGAGAAGCTACAATCA 898
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1057 CTCAGCTTCGGGAGGTAGCTCAGAAAGTTGCCCTTCAGGCATTGCGAGAAGCTACAATCA 1116
Query 899 CGGAAACTGTCGTTCGTCAT-CTCAAGACGTTCACCAATCTGAATAAATCAGCAAAAGCT 957
|||||| ||| ||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1117 CGGAAATTGTTGTTCGTCATAC-CAAGACGTTCACCAATCTGAGTAAATCAGCAAAAGCT 1175
Query 958 GATTGCCCTGGGGTGTGCTTTGAGAAGTTCATGGAGTTTCACCAGCAGATGGCACAAACC 1017
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GATTGCCCTGCGGTGTGCTTTGAGAAGTTCATGGAGTTTCACCAGCAGATGGCACAAACC 1235
Query 1018 ATTGGCGAACTCGCTTCCATTGAAGCAGCTGCT--T-TAGATGCTGAGAACAAGTCACAG 1074
|||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 1236 ATTGGCGAACTCACTTCCATTGAAGTAGCTGCTACTCCAGATGCTGAGAACAAGTCACAG 1295
Query 1075 AACATAAACACAAGAACCGAAAATCAGAAACCAAGAGAAGAAGAGCCTTCTTCGATCCTG 1134
||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1296 AACATAAACGCAAGAACCGAAAATCAGAAACCAACAGAAGAAGGGTCTTCTTCGATCCTG 1355
Query 1135 CATGAAATCGCTTATAATTCTATTGATCAGGAGAAAAGGAGATCAAAGAGGCGGATTGTC 1194
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1356 CATGAAATCGCTTATAATTCTATTGATCAGGAGAAAAGGAGATCAAAGAGACGGATTGTC 1415
Query 1195 CTGAAGCAGCA-AG--AAGGGAAGACATTGAGATCAAATGATGAGAACAAGAACCCAGTT 1251
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1416 CTGAAGCAGCAGAGCGAAGGGAAGACAGTGAGATCAAATGATGAGAACAAGAACCCAGCT 1475
Query 1252 TGTGGCGAAATAGGCAACACGATTAGGTTGGCTAAGGAGATCGAGGAAGAAGCTGCAAAC 1311
| ||||| ||| |||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1476 TCTGGCGGTATAAGCAACACGATTAGGTTAGCAAAGGAGATCGAGGATGAAGCTGCAAAC 1535
Query 1312 TGGTTCATGGAGTTCGTCGAAATGGCTCTAGAGAAAGGTATGAAGAAATCTAGAGGCCCT 1371
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1536 TGGTTCATGGAGTTCATCGAAATAGCTCTGGAGAAAGGTATGAAGAAATCTAGAGGCCCT 1595
Query 1372 GATGATGCAGACGTTAAGAAAGTTCCGCAATCTCTGATTCTCGGGGTTTTGAACTGGATT 1431
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1596 GATGATGCAGACGTTAAGAAGGTTCCGCAATCTCTGATTCTCGGGGTTTTAAACTGGATT 1655
Query 1432 GAAGTTGAACAGTCTAATAGCAACAACAA---GAGACGTACAGTCCATCCAAAAACATCA 1488
||||| ||||||||| ||||||||||||| |||||| | ||||||||||||| |||||
Sbjct 1656 GAAGTCGAACAGTCTGATAGCAACAACAACAAGAGACGCAGAGTCCATCCAAAAGCATCA 1715
Query 1489 AAGATCACTCGAAAGCTCAGAATTAAATTGAAGAATCCTTGA 1530
||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1716 AAGATCACTAGAAAGCTCAGAATTAAACTGAAGAATCCTTGA 1757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5