BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908621

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70350.1 | Symbols:  | unknown protein; Has 98 Blast hits to...   505    1e-142


> AT1G70350.1 | Symbols:  | unknown protein; Has 98 Blast hits 
to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:26507114-26508285 REVERSE 
LENGTH=568
Length=568

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 303/318 (95%), Gaps = 0/318 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGCCAACGGCGTGAGAAGAGCTCTTCAGGTATCGTCATCCTCCGGGAAGATACTA  60
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  24   ATGGCGGCCAACGGCGTGAGAAGAGCTCTTCAGGCATCGTCATCCTCCGGGAAGATACTC  83

Query  61   TTCGGTCGTTCATCAGCGGCAACTTCTTCTTCGAAGATCGGAAAATCAGCCGGAATTGCT  120
            || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  84   TTTGGTCGTTCATCAGCGGCAACTTCTGCTTCGAAGATCGGAAAATCAGCCGGAATTGCT  143

Query  121  TTTACGAATGGATCATCTTCTTCATCTCGTCCTTCACTTCGCAGACTCACATTCTCCAGG  180
            ||   ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct  144  TTCGGGAATGGATCATCTTCTTCAACTCGTCCCTCACTTCGTAGACTCACATTCTCCAGG  203

Query  181  GTACCTGTGGAAATGAGTGCAGGGGTTTCACTTATACCATTACATAGTGTTACTGCTTCA  240
            |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct  204  GTACCTGTGGAATTGAGTGCAGGGATTTCACTAATACCATTACATAGTGTTACTGCTTCA  263

Query  241  GCTTTGCTCACTTCATTGCTATCTCTCAGCAATCAAAACTGGAGTTGCTTATCCGAAGGA  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  264  GCTTTGCTCACTTCATTGCTATCTCTGAGCAATCAAAACTGGAGTTGCTTATCAGAAGGA  323

Query  301  TTTGCTTCAACACTATAA  318
            ||||||||||||||||||
Sbjct  324  TTTGCTTCAACACTATAA  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5