BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908622

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70360.1 | Symbols:  | F-box family protein | chr1:26508778-...   665    0.0  


> AT1G70360.1 | Symbols:  | F-box family protein | chr1:26508778-26509325 
FORWARD LENGTH=525
Length=525

 Score =  665 bits (360),  Expect = 0.0
 Identities = 490/548 (89%), Gaps = 27/548 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGGAATCTGGTGACACTTGTGAATTGACGATTGTGGTCATGACTGTTCATGCTGTT  60
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGGAGGAATCTGGTGACACTTGTGAATTGACGATTGTGATCATGACTGTTCATGCTGTT  60

Query  61   ATGTTAGAATCTGGATTTGTGCTGTTCGATCCTGATTCATCTATGCGTTTTAGCTTCTCG  120
            ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  61   ATGTTAGAATCTGGATTTGTGTTGTTTGATCCTGATTCATCTATGCGTTTTAGCTTCTCG  120

Query  121  GAGGAGACTTTGGTATCGCTTAACTATACTCTAGCTTCTGTGAAAGGAATAGTAAGTGTG  180
             || ||||||||||||||||||||||||||||| |||||||||||||||||||  || ||
Sbjct  121  AAGAAGACTTTGGTATCGCTTAACTATACTCTACCTTCTGTGAAAGGAATAGTCGGTTTG  180

Query  181  AATTTTGAGAACTTAGGAGGCGATGTTGTAGTTTATGGGTCTCTTAGTGCGGGTAGTTTG  240
            ||||||||| |   |||||||||   | | |  | | ||     ||      ||  ||| 
Sbjct  181  AATTTTGAG-A---AGGAGGCGA---T-T-G--T-T-GG-----TA------GT--TTT-  213

Query  241  GTTGGTATGGTGTCTATTGATAAACGTAGATCTGTGCACATTGTTGATTTGCTTATGGAC  300
            ||| || |||||||||||||||||||||| | |||||||||||||||||| |||||||| 
Sbjct  214  GTTCGTGTGGTGTCTATTGATAAACGTAGCTATGTGCACATTGTTGATTTACTTATGGAA  273

Query  301  ACTTCGAAATCTGACAAAGAAGAAGATACTTTGAGCATCCACCGTGAGGTACTCGTGTGG  360
            |||| |||||||||  ||||||||||||||||||||||  || || ||||||||||||||
Sbjct  274  ACTTTGAAATCTGATGAAGAAGAAGATACTTTGAGCATTGACTGTAAGGTACTCGTGTGG  333

Query  361  TGGAGAATGATAAAAGATGGTATTGTTACGCCTCTGTTGGTTAATCTTTGCTACAAAACT  420
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  334  TGGAGAATGATAAAAGATGGTATTGTTACGCCTCTGTTGGTTGATCTTTGCTACAAAACT  393

Query  421  GGCTTAGAACTTCCATCTTGCTTTATCCGTCTACCTCGAGAGCTAAAACACAAGATACTA  480
            || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  394  GGGTTAGAACTTCCACCTTGCTTTATCAGTCTACCTCGAGAGCTAAAACACAAGATACTA  453

Query  481  GAGTCGCTTCCCGGTGTGGACATTGCCACATTGGCCTGTGTTTCTTCTGAACTGCGAGAC  540
            |||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||
Sbjct  454  GAGTCGCTTCCCGGTGTGGATATTGGGACATTGGCTTGTGTTTCTTCTGAACTGCGAGAC  513

Query  541  CTGGCTTC  548
             |||||||
Sbjct  514  ATGGCTTC  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5