BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908642 Length=1398 Score E Sequences producing significant alignments: (Bits) Value AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein... 2097 0.0 AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein... 1042 0.0 > AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:26566579-26568729 REVERSE LENGTH=1407 Length=1407 Score = 2097 bits (1135), Expect = 0.0 Identities = 1321/1410 (94%), Gaps = 15/1410 (1%) Strand=Plus/Plus Query 1 ATGAATAAGCCCTTCATCGTTTCCCTGTTTGCTCTGTTAATGGTAGCTTCTTAT-G-G-- 56 |||| ||| ||||| || |||| |||||||||||||| ||||||||||||||| | | Sbjct 1 ATGATTAAACCCTTTATTATTTCTCTGTTTGCTCTGTTGATGGTAGCTTCTTATGGAGCT 60 Query 57 A-A--AAACA--TTCTAC-AGAGAACTTGACATTCTTGAGAAGCTTGAGAACCTCGATGT 110 | | ||| | || | | || |||||||||||||||| ||||||||||||||||||||| Sbjct 61 ACAGGAAAAATGTTGTTCAAG-GAACTTGACATTCTTGGGAAGCTTGAGAACCTCGATGT 119 Query 111 ACCTGAGGATGAGATTGAGGATGATGTGACGTTCTTTGATTTCTCGTCATTTACAAGCCA 170 |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 120 ACCTGAGGATGATATTGAGGATGATGTGACCTTCTTTGATTTCTCGTCGTTTACAAGCCA 179 Query 171 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTGGTGCAGCTGGAGATGGAGTTTC 230 ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 180 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTAATGCATCTGGAGATGGAGTTTC 239 Query 231 TGATGATACTCAGGCATTTATAAGCGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 290 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 TGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 299 Query 291 GTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCAACGAAATTCGATGGTCCATG 350 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAATTCGATGGTCCATG 359 Query 351 TCAAGAAAAATTGATCATTCAGATTGATGGAACGATCGTAGCACCAGATGAGCCTAGTCA 410 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || Sbjct 360 TCAAGAAAAATTGATCATTCAGATTGATGGAACAATCATAGCACCAGATGAGCCTAGCCA 419 Query 411 ATGGGACCCGAAATTCCAAAGG-GTCTGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 469 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 420 ATGGGACCCGAAATTCCCAAGGAAT-TGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 478 Query 470 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 538 Query 530 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 598 Query 590 ATGTGTATGTGAGAGGCTTAACAATCCGGAACAGCCAACAAATGCATTTGATCATAGCT- 648 |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| | Sbjct 599 ATGTGTATGTGAGAGGCTTAACTATCCGGAACAGCCAACAGATGCACTTGATCATA-CAA 657 Query 649 CGATCAAATACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGTGACAGTCCCAAC 708 || |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 658 CGGTCAACTACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGAGACAGTCCCAAC 717 Query 709 ACTGATGGAATTCATATCACCGCATCGACTGATGTTGTAGTCCAAGACAGTAAAATCAGC 768 ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 718 ACTGATGGAATTCATATAACCGCATCTACCGATGTTGTAGTCCAAGACAGTAAAATCAGC 777 Query 769 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCGAAGATAAAGATGAAGAGAATC 828 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 778 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCCAAGATAAAGATGAAGAGGATC 837 Query 829 TACTGTGGACCAGGACATGGAATCAGCATTGGAAGCCTTGGACAAGGTCATTCGACAGGA 888 |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| Sbjct 838 TACTGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGACAAGGACATTCGAAAGGA 897 Query 889 ACCGTCACTGCAGTTGTGTTGGATACTGCGTTCCTAAAAAACACAACTAATGGTCTAAGA 948 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 898 ACCGTCACTGCAGTTGTGTTGGAAACTGCGTTCTTAAAGAACACAACTAATGGTCTAAGA 957 Query 949 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1017 Query 1009 ATGCAGGACGTTGCAAATCCGATTATAATCGATCAATTCTACTGTGATTCGCCATCAACT 1068 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1018 ATGCAGGACGTTGCGAATCCGATTATAATCGATCAATTCTACTGTGATTCACCATCAACT 1077 Query 1069 TGTCAAAACCAGACATCGGCGGTTCACATAAGCGAGATAATGTACAGAAACATAACCGGA 1128 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1078 TGTCAAAACCAGACATCGGCGGTTCACATATCCGAGATAATGTACAGGAACATAACCGGA 1137 Query 1129 ACCACTAAAAGCGCGAAAGCCATCAAATTCGCGTGTAGTGACGCAGTCCCTTGCAGCCAC 1188 ||||| |||||| | ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1138 ACCACGAAAAGCTCAAAAGCCATCAACTTCAAGTGTAGTGACGCAGTCCCTTGCAGCCAC 1197 Query 1189 ATTGTACTCAACAATGTCAATTTGGAAGGCAATGATGGAAAAGTGGAAGCATATTGTAAC 1248 ||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1198 ATTGTCCTCAACAATATCAACTTGGAAGGCAATGATGGAAAAGTAGAAGCATATTGTAAC 1257 Query 1249 TCTGCTGAAGGGTTTGGTTATGGTGTGGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1308 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1258 TCTGCTGAAGGGTTTGGTTATGGTGTAGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1317 Query 1309 GACGACAAGGGCTTAAACCAAACTCATGAGTATTTGGCAGAAACTGTTATGATCGGAGAT 1368 ||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||| | | Sbjct 1318 GACGACAAGAGCTTAAACCAAACTGATCAGTATTTGGCAGAAACTATTATGGTCGAAAAA 1377 Query 1369 GAAACTGGAGATGTTTACGACGAGCTTTAA 1398 ||||||| | ||| | | || ||||||||| Sbjct 1378 GAAACTGAAAATGCTCATGATGAGCTTTAA 1407 > AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:8327312-8329622 FORWARD LENGTH=1453 Length=1453 Score = 1042 bits (564), Expect = 0.0 Identities = 1052/1286 (82%), Gaps = 39/1286 (3%) Strand=Plus/Plus Query 67 TACAGAGAACTTGACATTCTTGA-GAAGCTTGAGAACCTCGATGTACCTGAGGATGA-GA 124 |||| ||| |||||||||||||| | ||||||||||| | |||||| ||| | | || || Sbjct 149 TACACAGATCTTGACATTCTTGACG-AGCTTGAGAACTTTGATGTA-CTG-GTA-GATGA 204 Query 125 TTGAGGATGATGTGACGTTCTTTGATT-TCTCGTCATTTACAAGCCAATATTCTGGTAAG 183 ||| |||||| | | |||| |||| | | ||||| ||||||| |||||||||| Sbjct 205 -TGATGATGATACAAAGCTCTTGGATTGGC-CATCATTCACAAGCCGGCATTCTGGTAAA 262 Query 184 AATCTGGTGAATGTGGATAGC-TTTGGTGCAGCTGGAGATGGAGTTTCTGATGATACTCA 242 |||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||| Sbjct 263 AATCTGGTGAATGTTGATA-CATTCGGTGCAGCTGGAGATGGAGTTTCTGATGATACTCA 321 Query 243 GGCATTTATAAGCGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGTGTTAT-TGGTTC 301 |||||| ||||||| |||| || |||||| | || |||| |||||||| | |||||| Sbjct 322 GGCATTCGTAAGCGCATGGAGCAAAGCCTGCAGTACATCAAAATCTGTGTT-TCTGGTTC 380 Query 302 CACAAGGACGTAGCTATTTAGTAAATGCAACGAAA-TTCGATGGTCCATGTCAAGAAAAA 360 || |||||||| | ||||||||||| ||||| ||| ||| ||||||||||| || |||| Sbjct 381 CAGAAGGACGTCGATATTTAGTAAACGCAAC-AAAGTTCAATGGTCCATGTGAACAAAAG 439 Query 361 TTGATCATTCAGATTGATGGAACGATCGTAGCACCAGATGAGCCTAGTCAAT-GGGACCC 419 ||||||||||||||||| ||||| || || |||||||||||||| || |||| ||||| | Sbjct 440 TTGATCATTCAGATTGACGGAACAATAGTGGCACCAGATGAGCCCAG-CAATTGGGACTC 498 Query 420 GAAA-TTCCAAAGGGTCTGGCTTCAA-TTTTCCAAA-CTCCAAGGAGTTGTATTCCAAGG 476 ||| ||||| || | ||||| | | ||||| ||| ||| |||| || || || ||||| Sbjct 499 -AAAGTTCCAGAGAATTTGGCT-CGAGTTTTC-AAAGCTCAAAGGGGTCGTGTTTCAAGG 555 Query 477 GAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGAAGAACAA 536 ||| ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||| Sbjct 556 GAAAGGAGTTATAGATGGTTCAGGCAGCAAATGGTGGGCTGCTTCTTGCAAGAAAAACAA 615 Query 537 GTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAAATGTGTA 596 |||||| |||||| | |||||||||| || ||||||||| | || |||||| |||| | Sbjct 616 GTCTAATCCTTGCAAAAGCGCACCAACTGCACTAACTATAGAATCTAGTTCAGGTGTGAA 675 Query 597 TGTGAGAGGCTTAACAATCCGGAACAGCCAACAAATGCATTTGATCATAGCTCGATCAAA 656 || || ||||| ||||||| ||||||||| || ||| |||| |||||||| | ||| | Sbjct 676 AGTAAGTGGCTTGACAATCCAGAACAGCCAGCAGATGAATTTCATCATAGCAAGGTCAGA 735 Query 657 TACAGTTCGAATCTCTAGAG-TTATGGTCACATCTCCAGGTGACAGTCCCAACACTGATG 715 | |||||||| |||| | || |||||||| | |||||||| || |||||||||||||||| Sbjct 736 TTCAGTTCGAGTCTCCA-AGGTTATGGTCTCTTCTCCAGGAGATAGTCCCAACACTGATG 794 Query 716 GAATTCATATCACCGCATCGACTGATGTTGTAGTCCAAGACAGTAAAATCAGCACAGGAG 775 |||| |||||||| | ||| || ||||| | | |||||| |||||||| ||||||| | Sbjct 795 GAATCCATATCACTGGATCTACCAATGTTATCCTTCAAGACTGTAAAATCGGCACAGGGG 854 Query 776 ATGATTGTGTCTCGATTGTGAATGGAAGCGCGAAGATAAAGATGAAGAGA-ATCTACTGT 834 |||||||||||||||||||||||| ||| |||| ||||||||||||| | ||||| ||| Sbjct 855 ATGATTGTGTCTCGATTGTGAATGCCAGCTCGAATATAAAGATGAAGA-ACATCTATTGT 913 Query 835 GGACCAGGACATGGAATCAGCATTGGAAGCCTTGGACAAGG-TCATTCGACAGGAACCGT 893 ||||| |||||||||||||| |||||||| ||||| |||| | || ||||||| | || Sbjct 914 GGACCTGGACATGGAATCAGTATTGGAAGTCTTGGG-AAGGATAATACGACAGGCATTGT 972 Query 894 CACTGCA-GTTGTGTTGGATACTGCGTTCCTAAAA-AACACAACTAATGGTCTAAGAATC 951 || || ||||||||||| ||||| || | | | || ||||||||||| || ||||| Sbjct 973 AACA-CAAGTTGTGTTGGACACTGCCTTATTGAGAGAA-ACAACTAATGGACTCAGAATA 1030 Query 952 AAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAA-CGTAGTGAT 1010 || |||| ||||| ||| ||||||||| ||||| | || ||| | || ||||| ||| Sbjct 1031 AAAACATATCAGGGAGGTTCTGGTTACGTTCAGGGTATTCGATTC-ACAAACGTAGAGAT 1089 Query 1011 GCAGGACGTTGCAAATCCGATTA-TAATCGATCAATTCTACTGTGATTCGCCATCAACTT 1069 ||| ||||| ||||| ||||| | | || ||||| |||||||||||||| ||| | || | Sbjct 1090 GCAAGACGTCGCAAACCCGAT-ACTCATTGATCAGTTCTACTGTGATTCTCCAACTACAT 1148 Query 1070 GTCAAAACCAGACATCGGCGGTTCACATAAGCGAGATAATGTACAGAAACATAACCGGAA 1129 ||||||||||||| ||||||||| | || ||| ||||||||||| | ||||||||||| | Sbjct 1149 GTCAAAACCAGACCTCGGCGGTTAAAATCAGCCAGATAATGTACCGGAACATAACCGGGA 1208 Query 1130 CCACTAAAAGCGCGAAAGCCATCAAATTCGCGTGTAGTGACGCAGTCCCTTGCAGCCACA 1189 | || ||||| ||||||||||||||||| ||||| || ||| |||||||||||||||||| Sbjct 1209 CAACCAAAAGTGCGAAAGCCATCAAATTTGCGTGCAGCGACACAGTCCCTTGCAGCCACA 1268 Query 1190 TTGTACTCAACAATGTCAAT-TTGGAAGGCAATGATGGAAAAGTGGAAGCATATTGTAAC 1248 | || ||||||||||| ||| ||| ||||||| || || |||| ||||| || ||||| Sbjct 1269 TAGTCCTCAACAATGTGAATCTTG-AAGGCAACGACGGTCAAGTCGAAGCTTACTGTAAT 1327 Query 1249 TCTGCTGAAGGGTTTGGTTATGGTGTGGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1308 || || ||||| ||||| ||||| ||| ||||||| || ||||| ||||| || ||||| Sbjct 1328 TCAGCCGAAGGTTTTGGGTATGGAGTGATTCATCCATCAGCGGACTGTCTCTACTCGCAC 1387 Query 1309 GACGACAAGGGCTTAAACCAAACTCA 1334 |||||||||||||| |||| ||||| Sbjct 1388 GACGACAAGGGCTTGGACCAGACTCA 1413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68875147740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5