BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908642
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein... 2097 0.0
AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein... 1042 0.0
> AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:26566579-26568729 REVERSE LENGTH=1407
Length=1407
Score = 2097 bits (1135), Expect = 0.0
Identities = 1321/1410 (94%), Gaps = 15/1410 (1%)
Strand=Plus/Plus
Query 1 ATGAATAAGCCCTTCATCGTTTCCCTGTTTGCTCTGTTAATGGTAGCTTCTTAT-G-G-- 56
|||| ||| ||||| || |||| |||||||||||||| ||||||||||||||| | |
Sbjct 1 ATGATTAAACCCTTTATTATTTCTCTGTTTGCTCTGTTGATGGTAGCTTCTTATGGAGCT 60
Query 57 A-A--AAACA--TTCTAC-AGAGAACTTGACATTCTTGAGAAGCTTGAGAACCTCGATGT 110
| | ||| | || | | || |||||||||||||||| |||||||||||||||||||||
Sbjct 61 ACAGGAAAAATGTTGTTCAAG-GAACTTGACATTCTTGGGAAGCTTGAGAACCTCGATGT 119
Query 111 ACCTGAGGATGAGATTGAGGATGATGTGACGTTCTTTGATTTCTCGTCATTTACAAGCCA 170
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 120 ACCTGAGGATGATATTGAGGATGATGTGACCTTCTTTGATTTCTCGTCGTTTACAAGCCA 179
Query 171 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTGGTGCAGCTGGAGATGGAGTTTC 230
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 180 ATATTCTGGTAAGAATCTGGTGAATGTGGATAGCTTTAATGCATCTGGAGATGGAGTTTC 239
Query 231 TGATGATACTCAGGCATTTATAAGCGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 290
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TGATGATACTCAGGCATTTATAAGAGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGT 299
Query 291 GTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCAACGAAATTCGATGGTCCATG 350
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTTATTGGTTCCACAAGGACGTAGCTATTTAGTAAATGCGACGAAATTCGATGGTCCATG 359
Query 351 TCAAGAAAAATTGATCATTCAGATTGATGGAACGATCGTAGCACCAGATGAGCCTAGTCA 410
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 360 TCAAGAAAAATTGATCATTCAGATTGATGGAACAATCATAGCACCAGATGAGCCTAGCCA 419
Query 411 ATGGGACCCGAAATTCCAAAGG-GTCTGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 469
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 420 ATGGGACCCGAAATTCCCAAGGAAT-TGGCTTCAATTTTCCAAACTCCAAGGAGTTGTAT 478
Query 470 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCCAAGGGAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGA 538
Query 530 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGAACAAGTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAA 598
Query 590 ATGTGTATGTGAGAGGCTTAACAATCCGGAACAGCCAACAAATGCATTTGATCATAGCT- 648
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
Sbjct 599 ATGTGTATGTGAGAGGCTTAACTATCCGGAACAGCCAACAGATGCACTTGATCATA-CAA 657
Query 649 CGATCAAATACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGTGACAGTCCCAAC 708
|| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 CGGTCAACTACAGTTCGAATCTCTAGAGTTATGGTCACATCTCCAGGAGACAGTCCCAAC 717
Query 709 ACTGATGGAATTCATATCACCGCATCGACTGATGTTGTAGTCCAAGACAGTAAAATCAGC 768
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 718 ACTGATGGAATTCATATAACCGCATCTACCGATGTTGTAGTCCAAGACAGTAAAATCAGC 777
Query 769 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCGAAGATAAAGATGAAGAGAATC 828
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 778 ACAGGAGATGATTGTGTCTCGATTGTGAATGGAAGCGCCAAGATAAAGATGAAGAGGATC 837
Query 829 TACTGTGGACCAGGACATGGAATCAGCATTGGAAGCCTTGGACAAGGTCATTCGACAGGA 888
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||
Sbjct 838 TACTGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGACAAGGACATTCGAAAGGA 897
Query 889 ACCGTCACTGCAGTTGTGTTGGATACTGCGTTCCTAAAAAACACAACTAATGGTCTAAGA 948
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 898 ACCGTCACTGCAGTTGTGTTGGAAACTGCGTTCTTAAAGAACACAACTAATGGTCTAAGA 957
Query 949 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATCAAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAACGTAGTG 1017
Query 1009 ATGCAGGACGTTGCAAATCCGATTATAATCGATCAATTCTACTGTGATTCGCCATCAACT 1068
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 ATGCAGGACGTTGCGAATCCGATTATAATCGATCAATTCTACTGTGATTCACCATCAACT 1077
Query 1069 TGTCAAAACCAGACATCGGCGGTTCACATAAGCGAGATAATGTACAGAAACATAACCGGA 1128
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1078 TGTCAAAACCAGACATCGGCGGTTCACATATCCGAGATAATGTACAGGAACATAACCGGA 1137
Query 1129 ACCACTAAAAGCGCGAAAGCCATCAAATTCGCGTGTAGTGACGCAGTCCCTTGCAGCCAC 1188
||||| |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1138 ACCACGAAAAGCTCAAAAGCCATCAACTTCAAGTGTAGTGACGCAGTCCCTTGCAGCCAC 1197
Query 1189 ATTGTACTCAACAATGTCAATTTGGAAGGCAATGATGGAAAAGTGGAAGCATATTGTAAC 1248
||||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 ATTGTCCTCAACAATATCAACTTGGAAGGCAATGATGGAAAAGTAGAAGCATATTGTAAC 1257
Query 1249 TCTGCTGAAGGGTTTGGTTATGGTGTGGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1308
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1258 TCTGCTGAAGGGTTTGGTTATGGTGTAGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1317
Query 1309 GACGACAAGGGCTTAAACCAAACTCATGAGTATTTGGCAGAAACTGTTATGATCGGAGAT 1368
||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||| | |
Sbjct 1318 GACGACAAGAGCTTAAACCAAACTGATCAGTATTTGGCAGAAACTATTATGGTCGAAAAA 1377
Query 1369 GAAACTGGAGATGTTTACGACGAGCTTTAA 1398
||||||| | ||| | | || |||||||||
Sbjct 1378 GAAACTGAAAATGCTCATGATGAGCTTTAA 1407
> AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:8327312-8329622 FORWARD LENGTH=1453
Length=1453
Score = 1042 bits (564), Expect = 0.0
Identities = 1052/1286 (82%), Gaps = 39/1286 (3%)
Strand=Plus/Plus
Query 67 TACAGAGAACTTGACATTCTTGA-GAAGCTTGAGAACCTCGATGTACCTGAGGATGA-GA 124
|||| ||| |||||||||||||| | ||||||||||| | |||||| ||| | | || ||
Sbjct 149 TACACAGATCTTGACATTCTTGACG-AGCTTGAGAACTTTGATGTA-CTG-GTA-GATGA 204
Query 125 TTGAGGATGATGTGACGTTCTTTGATT-TCTCGTCATTTACAAGCCAATATTCTGGTAAG 183
||| |||||| | | |||| |||| | | ||||| ||||||| ||||||||||
Sbjct 205 -TGATGATGATACAAAGCTCTTGGATTGGC-CATCATTCACAAGCCGGCATTCTGGTAAA 262
Query 184 AATCTGGTGAATGTGGATAGC-TTTGGTGCAGCTGGAGATGGAGTTTCTGATGATACTCA 242
|||||||||||||| |||| | || |||||||||||||||||||||||||||||||||||
Sbjct 263 AATCTGGTGAATGTTGATA-CATTCGGTGCAGCTGGAGATGGAGTTTCTGATGATACTCA 321
Query 243 GGCATTTATAAGCGCTTGGACCATGGCCTGCTCTGCACCAAACTCTGTGTTAT-TGGTTC 301
|||||| ||||||| |||| || |||||| | || |||| |||||||| | ||||||
Sbjct 322 GGCATTCGTAAGCGCATGGAGCAAAGCCTGCAGTACATCAAAATCTGTGTT-TCTGGTTC 380
Query 302 CACAAGGACGTAGCTATTTAGTAAATGCAACGAAA-TTCGATGGTCCATGTCAAGAAAAA 360
|| |||||||| | ||||||||||| ||||| ||| ||| ||||||||||| || ||||
Sbjct 381 CAGAAGGACGTCGATATTTAGTAAACGCAAC-AAAGTTCAATGGTCCATGTGAACAAAAG 439
Query 361 TTGATCATTCAGATTGATGGAACGATCGTAGCACCAGATGAGCCTAGTCAAT-GGGACCC 419
||||||||||||||||| ||||| || || |||||||||||||| || |||| ||||| |
Sbjct 440 TTGATCATTCAGATTGACGGAACAATAGTGGCACCAGATGAGCCCAG-CAATTGGGACTC 498
Query 420 GAAA-TTCCAAAGGGTCTGGCTTCAA-TTTTCCAAA-CTCCAAGGAGTTGTATTCCAAGG 476
||| ||||| || | ||||| | | ||||| ||| ||| |||| || || || |||||
Sbjct 499 -AAAGTTCCAGAGAATTTGGCT-CGAGTTTTC-AAAGCTCAAAGGGGTCGTGTTTCAAGG 555
Query 477 GAATGGAGTTATAGATGGTTCTGGTACCAAATGGTGGGCTGCTTCTTGCAAGAAGAACAA 536
||| ||||||||||||||||| || | ||||||||||||||||||||||||||| |||||
Sbjct 556 GAAAGGAGTTATAGATGGTTCAGGCAGCAAATGGTGGGCTGCTTCTTGCAAGAAAAACAA 615
Query 537 GTCTAACCCTTGCGTAGGCGCACCAACGGCTCTAACTATATATTCAAGTTCAAATGTGTA 596
|||||| |||||| | |||||||||| || ||||||||| | || |||||| |||| |
Sbjct 616 GTCTAATCCTTGCAAAAGCGCACCAACTGCACTAACTATAGAATCTAGTTCAGGTGTGAA 675
Query 597 TGTGAGAGGCTTAACAATCCGGAACAGCCAACAAATGCATTTGATCATAGCTCGATCAAA 656
|| || ||||| ||||||| ||||||||| || ||| |||| |||||||| | ||| |
Sbjct 676 AGTAAGTGGCTTGACAATCCAGAACAGCCAGCAGATGAATTTCATCATAGCAAGGTCAGA 735
Query 657 TACAGTTCGAATCTCTAGAG-TTATGGTCACATCTCCAGGTGACAGTCCCAACACTGATG 715
| |||||||| |||| | || |||||||| | |||||||| || ||||||||||||||||
Sbjct 736 TTCAGTTCGAGTCTCCA-AGGTTATGGTCTCTTCTCCAGGAGATAGTCCCAACACTGATG 794
Query 716 GAATTCATATCACCGCATCGACTGATGTTGTAGTCCAAGACAGTAAAATCAGCACAGGAG 775
|||| |||||||| | ||| || ||||| | | |||||| |||||||| ||||||| |
Sbjct 795 GAATCCATATCACTGGATCTACCAATGTTATCCTTCAAGACTGTAAAATCGGCACAGGGG 854
Query 776 ATGATTGTGTCTCGATTGTGAATGGAAGCGCGAAGATAAAGATGAAGAGA-ATCTACTGT 834
|||||||||||||||||||||||| ||| |||| ||||||||||||| | ||||| |||
Sbjct 855 ATGATTGTGTCTCGATTGTGAATGCCAGCTCGAATATAAAGATGAAGA-ACATCTATTGT 913
Query 835 GGACCAGGACATGGAATCAGCATTGGAAGCCTTGGACAAGG-TCATTCGACAGGAACCGT 893
||||| |||||||||||||| |||||||| ||||| |||| | || ||||||| | ||
Sbjct 914 GGACCTGGACATGGAATCAGTATTGGAAGTCTTGGG-AAGGATAATACGACAGGCATTGT 972
Query 894 CACTGCA-GTTGTGTTGGATACTGCGTTCCTAAAA-AACACAACTAATGGTCTAAGAATC 951
|| || ||||||||||| ||||| || | | | || ||||||||||| || |||||
Sbjct 973 AACA-CAAGTTGTGTTGGACACTGCCTTATTGAGAGAA-ACAACTAATGGACTCAGAATA 1030
Query 952 AAGACATGGCAGGGTGGTAATGGTTACGTAAAGGGTGTACGTTTCGAGAA-CGTAGTGAT 1010
|| |||| ||||| ||| ||||||||| ||||| | || ||| | || ||||| |||
Sbjct 1031 AAAACATATCAGGGAGGTTCTGGTTACGTTCAGGGTATTCGATTC-ACAAACGTAGAGAT 1089
Query 1011 GCAGGACGTTGCAAATCCGATTA-TAATCGATCAATTCTACTGTGATTCGCCATCAACTT 1069
||| ||||| ||||| ||||| | | || ||||| |||||||||||||| ||| | || |
Sbjct 1090 GCAAGACGTCGCAAACCCGAT-ACTCATTGATCAGTTCTACTGTGATTCTCCAACTACAT 1148
Query 1070 GTCAAAACCAGACATCGGCGGTTCACATAAGCGAGATAATGTACAGAAACATAACCGGAA 1129
||||||||||||| ||||||||| | || ||| ||||||||||| | ||||||||||| |
Sbjct 1149 GTCAAAACCAGACCTCGGCGGTTAAAATCAGCCAGATAATGTACCGGAACATAACCGGGA 1208
Query 1130 CCACTAAAAGCGCGAAAGCCATCAAATTCGCGTGTAGTGACGCAGTCCCTTGCAGCCACA 1189
| || ||||| ||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 1209 CAACCAAAAGTGCGAAAGCCATCAAATTTGCGTGCAGCGACACAGTCCCTTGCAGCCACA 1268
Query 1190 TTGTACTCAACAATGTCAAT-TTGGAAGGCAATGATGGAAAAGTGGAAGCATATTGTAAC 1248
| || ||||||||||| ||| ||| ||||||| || || |||| ||||| || |||||
Sbjct 1269 TAGTCCTCAACAATGTGAATCTTG-AAGGCAACGACGGTCAAGTCGAAGCTTACTGTAAT 1327
Query 1249 TCTGCTGAAGGGTTTGGTTATGGTGTGGTTCATCCTTCTGCGGATTGTCTGTATTCGCAT 1308
|| || ||||| ||||| ||||| ||| ||||||| || ||||| ||||| || |||||
Sbjct 1328 TCAGCCGAAGGTTTTGGGTATGGAGTGATTCATCCATCAGCGGACTGTCTCTACTCGCAC 1387
Query 1309 GACGACAAGGGCTTAAACCAAACTCA 1334
|||||||||||||| |||| |||||
Sbjct 1388 GACGACAAGGGCTTGGACCAGACTCA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5