BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908648
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70550.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2191 0.0
AT1G23340.1 | Symbols: | Protein of Unknown Function (DUF239) ... 955 0.0
> AT1G70550.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:26597313-26600219 FORWARD LENGTH=1926
Length=1926
Score = 2191 bits (1186), Expect = 0.0
Identities = 1332/1403 (95%), Gaps = 7/1403 (0%)
Strand=Plus/Plus
Query 1 ATGTGTTTAATAGGTTTGTTGGGAGATGTGTCAGTAACATCAAGAAGACGAACAACAATT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 198 ATGTGTTTAATAGGTTTGTTGGGAGATGTGTCAGTGACATCAAGAAGACGAACAACAATT 257
Query 61 CAAAACCGTATTAAATGTTGTCTTTTTGATCACTCAAGAAGAAAACAACAAGACAGCAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CAAAACCGTATTAAATGTTGTCTTTTTGATCACTCAAGAAGAAAACAACAAGACAGCAGA 317
Query 121 TGTTTTCATCATTCTTCACACCAAGTTTCGTTCAAGTCCGATACGATGTTCTCCTCTAGC 180
|||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 318 TGTTTTCATCATTCTTCACAACAAGTTTCGTTCAAGTCTGATCCGATGTTCTCCTCTAGC 377
Query 181 TTTCTCAGATTGATTCTTTTACTTTGTCTCCTCTCTTCTTCCTTCTCCTCCACCGCTTCT 240
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 378 TTTCTCAGATTGATTCTTTTACTCTGTCTCGTCTCTTCTTCCTTCTCCTCCACCACTTCT 437
Query 241 TCCTCCAATTCCACTGCTGCTGATCAAACTCTCCGGCCACAAGAAGAGCTCCAGAAGCTA 300
|||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 438 TCCTCCAACTCCACTGCCGCCGATCAAACTCTCCGGCCGCAAGAAGAGCTCCAGAAGCTA 497
Query 301 AAACTGATTAGACAAGAGCTCGACAAGATCAACAAGCCGGCTGGGAAAACTATTCAGAGC 360
| ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 498 ACACTGATTAGACAAGAACTCGACAAAATCAACAAGCCGGCTGTGAAAACTATTCAGAGC 557
Query 361 CCAGATGGAGATGTAATAGATTGTGTTTCGACTCATCAGCAACCAGCTTTCGATCATCCT 420
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 558 TCAGATGGAGATAAAATAGATTGTGTTTCAACTCATCAGCAACCAGCTTTCGATCATCCT 617
Query 421 CTCTTACAAGGACAGAGACCAATGAATCCGCCTGAGATCCCCAAAGGTTATAAAAAAGAT 480
|||||||||||||| | |||| || ||||||||||||| || ||||| || | |||||
Sbjct 618 CTCTTACAAGGACAAAAACCATTGGATCCGCCTGAGATACCAAAAGGATACAGCGAAGAT 677
Query 481 GAT-GAGTCGTATGAAGAAGATTCCCAGCTGTGGAGTTTATCCGGTGAGTCTTGTCCGGA 539
||| || || |||| | || | |||||||| |||||||||||||||||||||||||||||
Sbjct 678 GATGGA-TCATATG-A-AA-ACTCCCAGCTTTGGAGTTTATCCGGTGAGTCTTGTCCGGA 733
Query 540 AGGTACTATTCCGATACGAAGAACAACGGAACAAGACATGTTAAGAGCAAGTTCTGT-CA 598
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 734 AGGTACGATTCCGATAAGAAGAACAACGGAACAAGACATGTTAAGAGCAAGTTCTGTCCA 793
Query 599 GTAGATTTGGTCGGAAAATCAGGCGCGTGAGGAGAGATTCCACTAATAACGGACACGAAC 658
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 794 -AAGATTTGGTCGGAAAATCAGGCGCGTGAAGAGAGATTCCACAAATAACGGACACGAAC 852
Query 659 ATGCGGTGGGATATGTAACCGGGAGACAATACTACGGAGCAAAAGCAAGTATTAACGTGT 718
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 853 ATGCGGTGGGATATGTAACCGGGAGACAATATTACGGGGCAAAAGCAAGTATTAACGTGT 912
Query 719 GGTCGCCACGTGTTGCGAGCCAATACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCG 778
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GGTCGCCACGTGTTACGAGCCAATACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCG 972
Query 779 GTTCGTTCACACACGATCTTAATACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GTTCGTTCACACACGATCTTAATACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGT 1032
Query 839 ATGGGGATACTTACCCAAGATTCTTTACCTACTGGACGTCCGATGCATATCGAACAACGG 898
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1033 ACGGCGATACTTACCCAAGATTCTTTACCTATTGGACGTCCGATGCATATCGAACAACGG 1092
Query 899 GTTGCTACAATTTGTTGTGTTCCGGTTTCGTTCAAACCAACCGTCGAATCGCGATTGGAG 958
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1093 GTTGCTACAATTTGCTATGTTCCGGTTTCGTTCAAACCAACCGTCGAATCGCGATAGGAG 1152
Query 959 CTGCGATTTCTCCTAGATCTTCGTATAAAGGTGGACAATTCGATATAAGCTTGTTAATTT 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1153 CTGCGATTTCTCCTAGATCTTCGTATAAAGGTGGACAATTCGATATAAGCTTATTAATTT 1212
Query 1019 GGAAGGATCCGAAGCACGGTCACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGAT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1213 GGAAGGATCCGAAGCACGGTCACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGTT 1272
Query 1079 ATTGGCCTGCGTTTCTATTCACGCATCTAAAGCAACATGGGAGCATGGTCCAATTCGGCG 1138
||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1273 ATTGGCCAGCGTTTTTATTCACGCATCTAAAGCAACATGGAAGCATGGTCCAATTCGGGG 1332
Query 1139 GCGAGATTGTGAACAACCGACCCGGTGGTTCACACACTACGACCCAAATGGGAAGTGGCC 1198
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 1333 GCGAGATTGTGAACAACCGACCCGGCGGTTCACACACTACGACTCAAATGGGTAGTGGAC 1392
Query 1199 ATTTTGCCGGTGAAGGTTTTGGTAAAGCATCTTATTTCCGGAATCTCCAAATCGTTGATT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1393 ATTTTGCCGGTGAAGGTTTTGGTAAAGCATCTTATTTCCGGAATCTCCAAATTGTTGACT 1452
Query 1259 GGGACAATACTCTTATTCCCGTTTCGAATCTAAAGATTCTCGCAGATCATCCCAATTGTT 1318
||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1453 GGGACAACACTCTTATACCCGCTTCGAATCTAAAGATTCTCGCAGACCATCCCAATTGTT 1512
Query 1319 ATGATATAAGAGGTGGGACGAATCGTGTGTGGGGTAACTATTTTTATTATGGAGGTCCAG 1378
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1513 ATGATATAAGAGGTGGGACGAATCGTGTGTGGGGTAACTATTTTTACTATGGAGGTCCAG 1572
Query 1379 GAAAAAACCCTAGATGTCCATGA 1401
|||||||||||||||||||||||
Sbjct 1573 GAAAAAACCCTAGATGTCCATGA 1595
> AT1G23340.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:8283896-8286832 REVERSE LENGTH=1796
Length=1796
Score = 955 bits (517), Expect = 0.0
Identities = 942/1146 (82%), Gaps = 33/1146 (3%)
Strand=Plus/Plus
Query 269 CTCTCCGGCCAC-AAGAAGAGCTCCAGAAGCTAAAACTGATTAGACAAGAGCTCGACAAG 327
|||||||||| | ||| |||| | |||||| | ||||| || ||| || | ||| | |||
Sbjct 405 CTCTCCGGCCTCAAAG-AGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAG 463
Query 328 ATCAACAAGCCGGCTGGGAAAACTATTCAGAGCCCAGATGGAGATGTAATAGATTGTGTT 387
|| || || || || || || ||||| ||| ||||||||||| |||||||||| |
Sbjct 464 ATTAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTG-T 522
Query 388 TCGA-CTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAGA-GACCAATGA 445
|| | ||||||| || || ||||| ||||||||| | ||||| ||||| | ||||||||
Sbjct 523 TCCATCTCATCACCAGCCTGCTTTTGATCATCCTTTGTTACAGGGACA-ACGACCAATGG 581
Query 446 ATCCGCCTGAGATCCCCAAAGGTTATAAAAAAGATGATGAGTCGTATGAAGAAGATTCCC 505
|||| || ||||| || | ||| |||| |||| |||| || | | | || ||| ||
Sbjct 582 ATCCACCGGAGATGCCTATAGGGTATAGCCAAGAAAATGAATCCCACG-A-AA-ATTTCC 638
Query 506 AGCTGTGGAGTTTATCCGGTGAGTCTTGTCCGGAAGGTACTATTCCGATAC-GAAGAACA 564
|||| |||||||||| |||||||||||| ||||||||||| |||||||| | ||||||||
Sbjct 639 AGCTTTGGAGTTTATACGGTGAGTCTTGCCCGGAAGGTACGATTCCGAT-CAGAAGAACA 697
Query 565 ACGGAACAAGACATGTTAAGAGCAAGTTCTGTCAGTAGATTTGGTCGGAAAATCAGGCGC 624
||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 698 ACGGAGCAAGACATGTTAAGAGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGC 757
Query 625 GTGAGGAGAGATTCCA-CTAATAACGGACACGAACATGCGGTGGGATATGTAACCGGG-A 682
||||| || ||||| | | | ||| || ||||| |||||||| ||||| || | |||| |
Sbjct 758 GTGAGAAGGGATTCGAGC-AGTAATGGCCACGAGCATGCGGTTGGATACGT-ATCGGGAA 815
Query 683 GACAATACTACGGAGCAAAAGCAAGTATTAACGTGTGGTCGCCACGTGTTGCGAGCCAAT 742
| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 816 GTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAAT 875
Query 743 ACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCGGTTCGTTCACAC-ACGATCTTAAT 801
|||| |||||||| |||||||||||| | || |||||||| ||| | | ||||||||||
Sbjct 876 ACGAGTTTAGTCTATCTCAGATTTGGATCATCGCCGGTTCTTTCGC-CGGCGATCTTAAT 934
Query 802 ACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGTATGGGGATACTTACCCAAGATTC 861
||||| ||||| |||||||| |||||||||||| | || || || ||| |||||||||||
Sbjct 935 ACCATCGAAGCTGGTTGGCAGATTAGCCCGGAGCTATACGGAGACACTAACCCAAGATTC 994
Query 862 TTTACCTACTGGACGTCCGATGCATATCGAA-CAACGGGTTGCTACAATTTGTTGTGTTC 920
|| ||||| |||||||| ||||| || | || |||| || ||||| || | | |||||
Sbjct 995 TTCACCTATTGGACGTCGGATGCTTA-CCAAGCAACAGGATGCTATAACCTACTATGTTC 1053
Query 921 CGGTTTCGTTCAAACCAACCGTCGAATCGCGATTGGAGCTGCGATTTCTCCTAG-ATCTT 979
||||| |||||||| ||| ||||||||| |||||||| |||||||| || | || |
Sbjct 1054 TGGTTTTGTTCAAACAAACAATCGAATCGCAATTGGAGCGGCGATTTCGCC-CGTTTCGT 1112
Query 980 CGTATAAAGGTGGACAATTCGATATAAGCTTGTTAATTTGGAAGGATCCGAAGCACGGTC 1039
||||||||||||||||||||||||||||||| || || |||||||| || ||||| || |
Sbjct 1113 CGTATAAAGGTGGACAATTCGATATAAGCTTATTGATATGGAAGGACCCAAAGCATGGAC 1172
Query 1040 ACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGATATTGGCCTGCGT-T-TCTATT 1097
| |||||||| ||||||||||| ||| || |||||||||||||||| ||| | ||| ||
Sbjct 1173 ATTGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCC--CGTATCTCTGTT 1230
Query 1098 CACGCATCTAAAGCAACATGGGAGCATGGTCCAATTCGGCGGCGAGATTGTGAACA-ACC 1156
||| || || | | | ||||| | ||||||||| || || |||||||| ||||||| ||
Sbjct 1231 CACACACCTGAGGGAGCATGGAAACATGGTCCAGTTTGGTGGCGAGATCGTGAACACAC- 1289
Query 1157 GACCCGGTGGTTCACACACTACGACCCAAATGGGAAGTGGCCATTTTGCCGGTGAAGGTT 1216
|||| ||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 1290 GACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTT 1349
Query 1217 TTGGTAAAGCATCTTA-TTTCCGGAATCTCCAAATCGTTGATTGGGACAATACTCTTATT 1275
|||| ||||| ||||| ||| ||||||| ||||| || |||||||||||||||||||||
Sbjct 1350 TTGGAAAAGCGTCTTACTTTA-GGAATCTTCAAATGGTAGATTGGGACAATACTCTTATT 1408
Query 1276 CCCGTT-TCGAATCT-AAAGATTCTCGCAGATCATCCCAATTGTTATGATATAAGAGGTG 1333
|| | | || ||||| |||| |||| ||||||||||| |||||||||||||||||||| |
Sbjct 1409 CC-GATATCTAATCTTAAAG-TTCTTGCAGATCATCCTAATTGTTATGATATAAGAGGAG 1466
Query 1334 GGACGAATCGTGTGTGGGGTAACTATTTTTATTATGGAGGTCCAGGAAAAAACCCTAGAT 1393
|| || ||||| |||||||||| ||||||||| ||||| || || |||||| | | ||
Sbjct 1467 GGGTAAACCGTGTTTGGGGTAACTTTTTTTATTACGGAGGACCGGGTAAAAACTCGAAAT 1526
Query 1394 GTCCAT 1399
||||||
Sbjct 1527 GTCCAT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5