BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908653

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70581.1 | Symbols:  | other RNA | chr1:26616267-26616996 FO...   315    2e-85


> AT1G70581.1 | Symbols:  | other RNA | chr1:26616267-26616996 
FORWARD LENGTH=730
Length=730

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 242/276 (88%), Gaps = 7/276 (3%)
 Strand=Plus/Plus

Query  1    ATGGATTTTCCGGAAAAGTCGCTTAAAGTGACGATCCCGGTGAAAGCTCCGGTGAGTTCA  60
            ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct  342  ATGGATTTTCCTGAAAAGTCGCTTAAAGTGAGGATCCCGGTGAAAGCTCCGGTGAGTTCT  401

Query  61   AAGCCagagaaagaagaaaaagaattagaaaaagaaa-aagcggaagaaaaTGGATTCAC  119
            |||||||||||||||||| ||  |  || |||||||| | |  |||||| || |||||||
Sbjct  402  AAGCCAGAGAAAGAAGAACAA-CA--AG-AAAAGAAAGAGGAAGAAGAAGATAGATTCAC  457

Query  120  AACTCCAAAGGGGGAGGAATTTAGGATTCCGCCGCAACTTGAGTGTCCTCCGGCACCGGG  179
            |||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||| 
Sbjct  458  AACTCCAAAGGGGGAGGAATTTAGAATTCCGCCGCTATTTGAGTGTCCTCTGGCACCGGA  517

Query  180  GCCACGCATCTACCGGAAAAAGATCGACAAACACCGCAAAAAAGCT-TCCGGGCAAAGGA  238
            ||||||||||| |  |||||| ||||| ||||  ||| |||||||  || ||||||||||
Sbjct  518  GCCACGCATCTTCAAGAAAAAAATCGAAAAACGTCGCCAAAAAGCCGTC-GGGCAAAGGA  576

Query  239  TTATCTCCTTTAACGTTCAAGATTTGGATACTTTCT  274
             ||| |||||||||||||||||||| ||||||||||
Sbjct  577  ATATATCCTTTAACGTTCAAGATTTAGATACTTTCT  612



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5