BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908697
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-... 941 0.0
> AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-26883818
FORWARD LENGTH=1179
Length=1179
Score = 941 bits (509), Expect = 0.0
Identities = 768/888 (86%), Gaps = 38/888 (4%)
Strand=Plus/Plus
Query 353 TCGACAAATCTCAAAACAAAACTATTCAAGTATTGGGGTCTTGTGATGGATTGGTCTTGA 412
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TCGACGAATCTCAAAATAAAACTATTCAAGTATTGGGGTCTTGTGATGGATTGGTCTTGC 370
Query 413 TTCGGATCTACGACGATTTTAGGTACATTTACTTGATCAATCCGACGATTGGAGAACACA 472
|||||||| | |||||||| |||| ||||||||||||||||||||||| | ||||||||
Sbjct 371 TTCGGATCCATGACGATTTCAGGTCCATTTACTTGATCAATCCGACGACTAAAGAACACA 430
Query 473 TGACACTTTATCCCGAATTTACGCAATGGCCATTAACTTTTAGATTCGAATTTA---CCG 529
||| ||||| ||||||||||| |||||||||||| ||| |||| || | || | |||
Sbjct 431 TGAAACTTTCTCCCGAATTTATGCAATGGCCATTTACTCTTAG-TT--ACTTAACCCCCG 487
Query 530 CAATGGTCTATAGACCATGGAGACAAGTTGATCAAGGAGTCTTGGATTATCCACCAGA-- 587
|||||| | ||| ||||||||||||| || |||| ||| ||||||||| | || |
Sbjct 488 CAATGGCCAATAAACCATGGAGACAACTTTCTCAATCAGTATTGGATTAT-GA-CATATC 545
Query 588 TGAGAAGAGAATGCCGTTTCATGCTGGATTTGGCAAAGATATTGTTACAAAATCTTATAA 647
|| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 546 TGTGAAGAGAATGCCGTCTCTTGCTGGATTTGGCAAAGATATTGTTAAAAAATCTTATAA 605
Query 648 GGTGGTTTTGATATATACAAGATTTGGAAA-AGGTGATCGTTG-TTTCAAGGCCAAGGTC 705
||||||||||||||||||||||| | |||| | ||||| || |||||||||||||||
Sbjct 606 GGTGGTTTTGATATATACAAGATAT-GAAATACATGATC-ATGAGTTCAAGGCCAAGGTC 663
Query 706 CTATCCCTTGATAGTGGTGAGCAAAGAAG-CGCA-GG-TTTAT-ACAT-TTTTAATGACC 760
||||||||||||| |||||||||||| || || | || ||||| |||| | | ||
Sbjct 664 CTATCCCTTGATAATGGTGAGCAAAG-AGACGTAGGGTTTTATGACATACATCATTG--T 720
Query 761 ATGACTTCAT-CAAAGAGCAAACATCAGTCTACGCAAACGGATCCCTCTTTTGGTTGATA 819
|| |||| | | | |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 721 AT--CTTC-TGCGATGAGCAAACATCAGTCTACGCCAACGGATCCCTCTTTTGGTTGACA 777
Query 820 TTAAATAAGTATAAG-AAAACA-CTT-TCATTGCTACTAGCTATCGATCTTCACATC-GA 875
||||| ||| | || ||||| ||| || |||| |||||||||||||||||| | ||
Sbjct 778 TTAAAGAAG-CTTAGTCAAACATCTTACCA--GCTATTAGCTATCGATCTTCACA-CTGA 833
Query 876 AGAATTTCGATGGATATTATTACCAACA-TGTTACACCAGATATGATTCTAGTATAGAAA 934
|||||||||||||||||||||||| | | ||| |||||| ||||| | ||| ||||||||
Sbjct 834 AGAATTTCGATGGATATTATTACC-AGAGTGTGACACCAAATATGCTACTAATATAGAAA 892
Query 935 TGTGGAATCTGAATGACCGTTTGTGCGTATCGGATGTGCTAGAATGTTCAAATTTGATCG 994
|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 893 TGTGGAATCTGAATGAACGTTTGTGCCTATCGGATGTGCTAGAAAGTTCAAATTTGGTCG 952
Query 995 TTTGGAGTTTACAACAAGAATATCCTACCGTAAAATGGGAGAAAATATATGCTATTGATA 1054
||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| | |
Sbjct 953 TTTGGAGTTTACACCAAGAATATCCTACCGAAAAATGGGAGAAAATATATTCTATTAAGA 1012
Query 1055 TTG-GGTTTATAAGAACCAACCAGTTACATGAAAAGTTTTGGATGCTTGGTCTAGCGGCT 1113
||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTGACG-TTATAAGAACCAACCAATTACATGAAAAGTTTTGGATGCTTGGTCTAGCGGCT 1071
Query 1114 GCCTATTTTCCAAGTATTAGGAATCATCGAGATCAAGTTTCTTTTTTCAGACAAAGAACG 1173
||||||||| ||| ||| || |||| || |||||||||||||||||| ||||||||||||
Sbjct 1072 GCCTATTTTTCAAATATCAGAAATCGTCAAGATCAAGTTTCTTTTTTTAGACAAAGAACG 1131
Query 1174 ATTTCATATTCGCCAACAATGATTTCTCCTTCAAGTTTGATGTTTTGA 1221
||||| |||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 1132 ATTTCGTATTTGCCAACAATGATTTCTCCTTCAAATTTGATGCTTTGA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5