BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908717
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:268... 1849 0.0
> AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:26824677-26826748
FORWARD LENGTH=1543
Length=1543
Score = 1849 bits (1001), Expect = 0.0
Identities = 1292/1432 (90%), Gaps = 21/1432 (1%)
Strand=Plus/Plus
Query 84 CGACGGAGAACAAGTAAACACGAAAGATGGTTTTTTACGGGAGACGAAGAAACTTAGTTA 143
|||| ||||| ||||||||| ||||||||| ||||| ||||| |||||||||||||||||
Sbjct 121 CGACAGAGAAGAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTA 180
Query 144 CATCGCCGGTCCGATGATTGCGGTGAGCTCGTCTATGTATGTTCTTCAGGTGATATCGAT 203
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 181 CATCGCCGGTCCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTAT 240
Query 204 AATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCAATTGCCGTTTCTTT 263
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 241 AATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTT 300
Query 264 CTGCGGCGTCACCGGTTTAAGCGTCGTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTG 323
|||| ||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 301 CTGCAGCGTCACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATG 360
Query 324 TGGTCAAGCTCATGGAGCTAAGCAAT-TCGAGAAGCTTGGT-TATCATACTTACACAGGG 381
|||||||||| ||||||||||||||| | |||||||||||| | |||||||||||||||
Sbjct 361 TGGTCAAGCTAATGGAGCTAAGCAATAT-GAGAAGCTTGGTGT-TCATACTTACACAGGA 418
Query 382 ATTGTCTCTTTGTTTCTTGTGTGTATTCCTTTGTCTGTGCTATGGAGTTACATGGGTGAT 441
|||||||||||||||||||||||||||||| | ||| | || |||| ||||| ||||||
Sbjct 419 ATTGTCTCTTTGTTTCTTGTGTGTATTCCTCTCTCTCTTCTCTGGACATACATTGGTGAT 478
Query 442 ATACTTTCCCTTATTGGACAAGATCCTATGGTTGCTCAACAAGCAGGGAAGTTTGCAACT 501
|||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 479 ATACTTTCTCTTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACT 538
Query 502 TGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGTTTTTTCCAA 561
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 TGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAA 598
Query 562 GCGCAGAGTCTAATTTTGCCTTTGATTATGAGCTCAGTCTCTTCTCTCTGTGTCCACGTT 621
|| ||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||| ||
Sbjct 599 GCACAGTCTCTGATTTTGCCTTTGGTTATGAGTTCAGTCTCTTCTCTCTGTATCCACATT 658
Query 622 GTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGGAGCCTCGGTGCAGCTATTGCG 681
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 GTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGAAGCCTCGGTGCAGCTATTGCG 718
Query 682 CTTGACGTTTCTTACTGGCTAAACGTGATTGTTCTTGGATTATACATGACGTTTTCTTCT 741
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 ATCGGTGTTTCTTACTGGCTAAACGTGACTGTTCTTGGATTATACATGACGTTTTCTTCT 778
Query 742 AGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTGTGTTTAAAGGAATGGGAGAGTTT 801
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 779 AGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTT 838
Query 802 TTCCGGTTTGGAGTCCCATCTGCC-CTTATGATTTGCCTCGAGTGGTGGTCATTCGAAAT 860
|||||||||||| |||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 839 TTCCGGTTTGGAATCCCATCTGCATCT-ATGATTTGCCTTGAGTGGTGGTCATTCGAATT 897
Query 861 TCT-GCTCTTACTCTCTGGGATCTTACCAAATCCAAAGCTAGAAGCCTCTGTTCTCTCAA 919
| | | || | |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 898 TTTAG-TCCTGCTCTCTGGTATTTTACCAAATCCGAAGCTAGAAGCCTCTGTTCTCTCAG 956
Query 920 TCTGTCTATCAACAATCAA-CATCGT-GTACCAAATAGCAGCTAGTCTCGGCGCAGCAGC 977
||||||| |||||| ||| | || | ||||||||| ||| |||||||| ||||||||
Sbjct 957 TCTGTCTTTCAACA--CAATCCTCCTTGTACCAAATCCCAGAGAGTCTCGGTGCAGCAGC 1014
Query 978 AAGTACAAGAGTTGCAAACGAATTAGGAGCTGGAAAACCGAAACAAGCTCGAATGGCGGT 1037
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1015 AAGTACAAGAGTTGCAAACGAGTTAGGAGCTGGAAACCCGAAACAAGCTCGAATGGCGGT 1074
Query 1038 TTACACAGTGATGGTCATTACAGGTGTAGAATCAATAATGGTGAGCGCAATAGTTTTTAG 1097
|||||||| |||||| || |||||||||||||||||||||||| | |||||||| ||| |
Sbjct 1075 TTACACAGCGATGGTTATAACAGGTGTAGAATCAATAATGGTGGGTGCAATAGTCTTTGG 1134
Query 1098 TGCAAGAAACGT-TTATGGTTACCTATTTAGCTCTGAAACCGAAGTTGTGGATTATG-AA 1155
||||||||| || || |||||||||||| || |||||||| |||||||| || |||| ||
Sbjct 1135 TGCAAGAAATGTATT-TGGTTACCTATTCAGTTCTGAAACTGAAGTTGTAGACTATGTAA 1193
Query 1156 AGATCAATGGTTCCATTGGTTGCTTTATCGGTCATATTCGATGCTTTTCACGCAGTTCT- 1214
| |||||||| |||| || || |||||||||||||||||||||| ||||||||| |||
Sbjct 1194 A-ATCAATGGCTCCACTGCTTTCTTTATCGGTCATATTCGATGCCCTTCACGCAGCTCTC 1252
Query 1215 TGCGGGTGTGACTAGAGGATCAGGGAGGCAAGATATTGGGGCTTACGTAAACCTAGCAGC 1274
| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1253 T-CGGGTGTGGCTAGAGGATCAGGGAGGCAAGATATTGGGGCATACGTAAACCTAGCAGC 1311
Query 1275 ATACTATCTCTTTGGGATACCAACTGCTATAATATTAGCTTTTAGGTTTAAAATGAGAGG 1334
||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1312 ATACTATCTCTTTGGAATACCAACTGCTATACTATTAGCTTTTGGGTTTAAAATGAGAGG 1371
Query 1335 AAGAGGAATCTGGATTGGGATCACAGTTGGATCCTTTGTGCAAGCTGTTTTGCTCGGTTT 1394
||||||| |||||||||| ||||||||||| || | ||| |||||||||||||||||| |
Sbjct 1372 AAGAGGACTCTGGATTGGAATCACAGTTGGGTCATGTGTACAAGCTGTTTTGCTCGGTCT 1431
Query 1395 TCTTGTCATCCTTACCAACTGGAAACAACAGGCGAGAGATGCGAGAGAAAGACTGATGGG 1454
| | || ||||| || || |||||| ||||||||||| | || ||||||||| |||||||
Sbjct 1432 TATCGTAATCCTCACTAATTGGAAAAAACAGGCGAGAAAGGCTAGAGAAAGAGTGATGGG 1491
Query 1455 TGAGGGGTTTGAAGATAAAGAAAGTGAAGAT---CATGAAGAGATCAGCTAA 1503
||| | || |||||| |||||||||||||| |||||| | |||||||||
Sbjct 1492 TGATGAGTATGAAGAGAAAGAAAGTGAAGAAGAACATGAATACATCAGCTAA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5