BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908717 Length=1503 Score E Sequences producing significant alignments: (Bits) Value AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:268... 1849 0.0 > AT1G71140.1 | Symbols: | MATE efflux family protein | chr1:26824677-26826748 FORWARD LENGTH=1543 Length=1543 Score = 1849 bits (1001), Expect = 0.0 Identities = 1292/1432 (90%), Gaps = 21/1432 (1%) Strand=Plus/Plus Query 84 CGACGGAGAACAAGTAAACACGAAAGATGGTTTTTTACGGGAGACGAAGAAACTTAGTTA 143 |||| ||||| ||||||||| ||||||||| ||||| ||||| ||||||||||||||||| Sbjct 121 CGACAGAGAAGAAGTAAACAAGAAAGATGGGTTTTTGCGGGAAACGAAGAAACTTAGTTA 180 Query 144 CATCGCCGGTCCGATGATTGCGGTGAGCTCGTCTATGTATGTTCTTCAGGTGATATCGAT 203 ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || Sbjct 181 CATCGCCGGTCCGATGATTGCAGTGAACTCGTCTATGTATGTTCTTCAGGTGATATCTAT 240 Query 204 AATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCAATTGCCGTTTCTTT 263 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 241 AATGATGGTTGGTCATCTCGGTGAGCTTTTCCTCTCTAGCACCGCCATTGCTGTTTCTTT 300 Query 264 CTGCGGCGTCACCGGTTTAAGCGTCGTCTTTGGATTGGCTAGTGCATTGGAGACTTTGTG 323 |||| ||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| || Sbjct 301 CTGCAGCGTCACCGGTTTCAGCGTCGTTTTTGGATTGGCTAGTGCGTTGGAAACTTTATG 360 Query 324 TGGTCAAGCTCATGGAGCTAAGCAAT-TCGAGAAGCTTGGT-TATCATACTTACACAGGG 381 |||||||||| ||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct 361 TGGTCAAGCTAATGGAGCTAAGCAATAT-GAGAAGCTTGGTGT-TCATACTTACACAGGA 418 Query 382 ATTGTCTCTTTGTTTCTTGTGTGTATTCCTTTGTCTGTGCTATGGAGTTACATGGGTGAT 441 |||||||||||||||||||||||||||||| | ||| | || |||| ||||| |||||| Sbjct 419 ATTGTCTCTTTGTTTCTTGTGTGTATTCCTCTCTCTCTTCTCTGGACATACATTGGTGAT 478 Query 442 ATACTTTCCCTTATTGGACAAGATCCTATGGTTGCTCAACAAGCAGGGAAGTTTGCAACT 501 |||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||||||| Sbjct 479 ATACTTTCTCTTATTGGACAAGATGCTATGGTTGCTCAAGAAGCTGGGAAGTTTGCAACT 538 Query 502 TGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGTTTTTTCCAA 561 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 539 TGGCTCATACCCGCGCTCTTTGGTTACGCTACTTTGCAGCCGCTTGTTCGGTTTTTCCAA 598 Query 562 GCGCAGAGTCTAATTTTGCCTTTGATTATGAGCTCAGTCTCTTCTCTCTGTGTCCACGTT 621 || ||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||| || Sbjct 599 GCACAGTCTCTGATTTTGCCTTTGGTTATGAGTTCAGTCTCTTCTCTCTGTATCCACATT 658 Query 622 GTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGGAGCCTCGGTGCAGCTATTGCG 681 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 659 GTCCTCTGTTGGAGCTTGGTCTTTAAGTTTGGTCTTGGAAGCCTCGGTGCAGCTATTGCG 718 Query 682 CTTGACGTTTCTTACTGGCTAAACGTGATTGTTCTTGGATTATACATGACGTTTTCTTCT 741 | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 719 ATCGGTGTTTCTTACTGGCTAAACGTGACTGTTCTTGGATTATACATGACGTTTTCTTCT 778 Query 742 AGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTGTGTTTAAAGGAATGGGAGAGTTT 801 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 779 AGCTGTAGCAAGAGCCGTGCAACTATCTCCATGAGTTTGTTTGAAGGAATGGGAGAGTTT 838 Query 802 TTCCGGTTTGGAGTCCCATCTGCC-CTTATGATTTGCCTCGAGTGGTGGTCATTCGAAAT 860 |||||||||||| |||||||||| || ||||||||||| |||||||||||||||||| | Sbjct 839 TTCCGGTTTGGAATCCCATCTGCATCT-ATGATTTGCCTTGAGTGGTGGTCATTCGAATT 897 Query 861 TCT-GCTCTTACTCTCTGGGATCTTACCAAATCCAAAGCTAGAAGCCTCTGTTCTCTCAA 919 | | | || | |||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 898 TTTAG-TCCTGCTCTCTGGTATTTTACCAAATCCGAAGCTAGAAGCCTCTGTTCTCTCAG 956 Query 920 TCTGTCTATCAACAATCAA-CATCGT-GTACCAAATAGCAGCTAGTCTCGGCGCAGCAGC 977 ||||||| |||||| ||| | || | ||||||||| ||| |||||||| |||||||| Sbjct 957 TCTGTCTTTCAACA--CAATCCTCCTTGTACCAAATCCCAGAGAGTCTCGGTGCAGCAGC 1014 Query 978 AAGTACAAGAGTTGCAAACGAATTAGGAGCTGGAAAACCGAAACAAGCTCGAATGGCGGT 1037 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1015 AAGTACAAGAGTTGCAAACGAGTTAGGAGCTGGAAACCCGAAACAAGCTCGAATGGCGGT 1074 Query 1038 TTACACAGTGATGGTCATTACAGGTGTAGAATCAATAATGGTGAGCGCAATAGTTTTTAG 1097 |||||||| |||||| || |||||||||||||||||||||||| | |||||||| ||| | Sbjct 1075 TTACACAGCGATGGTTATAACAGGTGTAGAATCAATAATGGTGGGTGCAATAGTCTTTGG 1134 Query 1098 TGCAAGAAACGT-TTATGGTTACCTATTTAGCTCTGAAACCGAAGTTGTGGATTATG-AA 1155 ||||||||| || || |||||||||||| || |||||||| |||||||| || |||| || Sbjct 1135 TGCAAGAAATGTATT-TGGTTACCTATTCAGTTCTGAAACTGAAGTTGTAGACTATGTAA 1193 Query 1156 AGATCAATGGTTCCATTGGTTGCTTTATCGGTCATATTCGATGCTTTTCACGCAGTTCT- 1214 | |||||||| |||| || || |||||||||||||||||||||| ||||||||| ||| Sbjct 1194 A-ATCAATGGCTCCACTGCTTTCTTTATCGGTCATATTCGATGCCCTTCACGCAGCTCTC 1252 Query 1215 TGCGGGTGTGACTAGAGGATCAGGGAGGCAAGATATTGGGGCTTACGTAAACCTAGCAGC 1274 | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1253 T-CGGGTGTGGCTAGAGGATCAGGGAGGCAAGATATTGGGGCATACGTAAACCTAGCAGC 1311 Query 1275 ATACTATCTCTTTGGGATACCAACTGCTATAATATTAGCTTTTAGGTTTAAAATGAGAGG 1334 ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1312 ATACTATCTCTTTGGAATACCAACTGCTATACTATTAGCTTTTGGGTTTAAAATGAGAGG 1371 Query 1335 AAGAGGAATCTGGATTGGGATCACAGTTGGATCCTTTGTGCAAGCTGTTTTGCTCGGTTT 1394 ||||||| |||||||||| ||||||||||| || | ||| |||||||||||||||||| | Sbjct 1372 AAGAGGACTCTGGATTGGAATCACAGTTGGGTCATGTGTACAAGCTGTTTTGCTCGGTCT 1431 Query 1395 TCTTGTCATCCTTACCAACTGGAAACAACAGGCGAGAGATGCGAGAGAAAGACTGATGGG 1454 | | || ||||| || || |||||| ||||||||||| | || ||||||||| ||||||| Sbjct 1432 TATCGTAATCCTCACTAATTGGAAAAAACAGGCGAGAAAGGCTAGAGAAAGAGTGATGGG 1491 Query 1455 TGAGGGGTTTGAAGATAAAGAAAGTGAAGAT---CATGAAGAGATCAGCTAA 1503 ||| | || |||||| |||||||||||||| |||||| | ||||||||| Sbjct 1492 TGATGAGTATGAAGAGAAAGAAAGTGAAGAAGAACATGAATACATCAGCTAA 1543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74146204965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5