BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908725
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1155 0.0
> AT1G71200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:26835973-26837308 REVERSE
LENGTH=705
Length=705
Score = 1155 bits (625), Expect = 0.0
Identities = 684/711 (96%), Gaps = 9/711 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCTCAGCCGAATCATCAGACTTCAATATCAAGTTTACTTCATGATCGCTTGCAT 60
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCTTCTCAACCGAATCATCAGACTTCAATATCAAGTTTACTCCATGATCGCTTGCAT 60
Query 61 ATCCCTCCTGCAGAAACAATCGTTGAGAAACACTCCTCCGCAGAGAAGGACGACACTTGT 120
|||||||||||||||||||||||||||||| | | || |||||||| | |||||||||
Sbjct 61 ATCCCTCCTGCAGAAACAATCGTTGAGAAAGAGT-CT--GCAGAGAA-G--GACACTTGT 114
Query 121 CAATCACAAAGAAAAAGGAAAGAACCAGTTTTACATGAGGTTGATGGCTCAAGTAGTGGT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 115 CAATCACAAAGAAAAAGGAAAGAACCAGTTTTGCATGAGGTTGATGGCTCAAGTAGTGGT 174
Query 181 GCATCAAAGAAACAAGACCATAACGCTAAGGAGCGTTTAAGGAGGATGAGACTTCATGCC 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GCAGCAAAGAAACAAGACCATAACGCTAAGGAGCGTTTAAGGAGGATGAGACTTCATGCC 234
Query 241 TCTTACCTCACTCTCGGCACTCTTCTTCCTGATCATTCTTCTTCTTC--C-AAGAAGAAA 297
|||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 235 TCTTACCTCACTCTTGGCACTCTTCTTCCTGACCATTCTTCTTCTTCTTCAAAGAAGAAA 294
Query 298 TGGTCTGCACCGTCTATAATCGATAATGTGATCACTTACATTCCCAAGCTACAGAATGAA 357
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 TGGTCTGCACCATCTATAATCGATAATGTAATCACTTACATTCCCAAGCTACAGAATGAA 354
Query 358 GTTGGAGAGCTAACTCTTAGAAAGCAGAAGCTTGTGGAGTTAGAGAGACGGGGTCCTTCC 417
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 355 GTTGGAGAGCTAACTCTAAGAAAGCAGAAGCTTGTGGAGTTAGAGAGACGAGGTCCTTCT 414
Query 418 ATTCGAGCAATCTCGGTTCTTGAATTGGGGGAATCAGGTTATGAGGCTGTTGTACAGATA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATTCGAGCAATCTCGGTTCTTGAATTGGGGGAATCAGGTTATGAGGCTGTTGTACAGATA 474
Query 478 TGCTTGAAGAAAGAAAACGAAGATGAGTTCTCGAACTTGCTTCATGTAATGGAGCTGCAA 537
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 475 TGCTTGAAGAAAGAAAACGAAGATGAGTTCTCCAACTTGCTTCATGTAATGGAGGTGCAA 534
Query 538 GGTTTGAGTGTTTTAAGTGCCTCTACTTCTCAAGTTTGCCGAGAGCAAAGGGTGGTTTGT 597
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 535 GGTTTGAGTGTTTTAAGTGCTTCTACTTCTCAAGTTTGCCGAGAGCAAAGGGTGGTTTGC 594
Query 598 TACAACTTCCATGTCAAGATGGATGAGAAGCCATGTGAAGGTGATGACTACATCACAGTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TACAACTTCCATGTCAAGATGGATGAGAAGCCATGTGAAGGTGATGACTACATCACAGTG 654
Query 658 TTAAAGAACAACATCATTTCTTCGCTTCGTGACAACACAAAATGCAAATGA 708
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 TTAAAGAACAACATCATTTCTTCGCTTCGTGACAACACAAAGTGCAAATGA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5