BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908730
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71250.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1685 0.0
> AT1G71250.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:26860118-26861726 FORWARD LENGTH=1276
Length=1276
Score = 1685 bits (912), Expect = 0.0
Identities = 1056/1127 (94%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 1 ATGAACACAAACGGACAGAAGATGAAAGTTCATATTGGAAGATATGTGTTGATACTTGCC 60
|||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 8 ATGAACACAAACAGAAAGAAGATGAAAGTCCATATTGGAGGATATGTGTTGATACTTGCC 67
Query 61 GTGACGGCTTCTGTTATATTACAGCAGCCTGAGTTGGTCACCGGACAAGCTAGAGTTCCG 120
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 68 TTGACGGTTTCTGTTATATTACAGCAGCCTGAGTTGGTCACTGGACAAGCTAGAGTTCCT 127
Query 121 GCTATGTTTGTACTTGGAGACTCATTGGTCGATGCTGGGAACAACAACTTTATACAAACT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 128 GCTATGTTTGTACTTGGAGACTCATTGGTCGATGCTGGTAACAACAACTTTCTACAAACT 187
Query 181 CTAGCTCGAGCCAATTTCCTTCCTTATGGCATCGATTTGAACTTCC-GTCCTACTGGCAG 239
||||||||||||||||||| |||||||||||||| |||||| || | |||||||||||
Sbjct 188 GTAGCTCGAGCCAATTTCCTCCCTTATGGCATCGACATGAACTACCAG-CCTACTGGCAG 246
Query 240 ATTTAGCAACGGCCTGACTTTCATTGATCTGCTAGCTCAGTTGTTACAAATTCCATCGCC 299
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 247 ATTTAGCAACGGCCTGACTTTCATTGATCTGCTAGCTCGGTTGTTAGAAATTCCATCACC 306
Query 300 TCCTGCCTTTGCGGATCCAACCACATCAGGCAGTAGAATCCTCCAAGGAGTTAATTACGC 359
||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 307 CCCTCCCTTCGCGGATCCAACCACATCAGGCAATAGAATCCTCCAAGGAGTTAACTACGC 366
Query 360 GTCTGCAGCTGCTGGCATCCTCGATGAATCAGGCTTCAACTATGGTGGAAGATTCAGCCT 419
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 367 GTCTGCAGCTGCTGGCATCCTCGATGTATCAGGCTACAACTATGGTGGAAGATTCAGCCT 426
Query 420 GAGCCAGCAAATGGTGAATCTAGAGACGACACTAAGCCAACTGAGAACGATGATGAGCCC 479
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 427 GAACCAGCAAATGGTGAATCTAGAGACGACACTAAGCCAACTGCGAACGATGATGAGTCC 486
Query 480 CCAAAATTTTACGGATTACTTGGCAAGATCACTTGTGGTTCTCGTTTTTGGGAGCAATGA 539
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 487 CCAAAACTTTACGGATTACTTAGCAAGGTCGCTTGTGGTTCTCGTTTTTGGAAGCAATGA 546
Query 540 TTATATCAACAACTACCTTATGCCTAATCTCTACTCCTCCAGCATCAGATACACACCGCC 599
||||||||||||||||||||||||||||||||| |||||||| |||| || ||| ||
Sbjct 547 CTATATCAACAACTACCTTATGCCTAATCTCTACGATTCCAGCATAAGATTCAGACCACC 606
Query 600 TGTGTTTGCCAATCTACTTCTCAGTCAATACGCTCGTCAACTTCTTACTCTGTACGGCCT 659
|| |||||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||
Sbjct 607 TGACTTTGCCAATCTACTTCTCAGTCAATACGCTCGCCAGCTTCTGACTCTTTACAGCCT 666
Query 660 AGGTCTAAGAAAGATATTTATACCTGGAGTAGCACCACTAGGCTGCATACCAAACCAACG 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGTCTAAGAAAAATATTTATACCTGGAGTAGCACCACTAGGCTGCATACCAAACCAACG 726
Query 720 AGCCAGAGGTGTTTCGCCACCTGATAGATGTGTTGACAGTGTGAATCAGATTCTAGGCAC 779
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 727 AGCCAGAGGTATCTCGCCACCTGATAGATGTGTTGACAGCGTGAATCAGATTCTAGGCAC 786
Query 780 ATTTAACCAAGGGTTAAGGTCACTTGTTGACCAGCTGAACCAGCGATTACCTGGAGCCAT 839
||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct 787 ATTTAACCAAGGGCTAAAGTCACTTGTTGATCAGCTGAACCAGCGATCACCTGGAGCCAT 846
Query 840 ATATGTATACGGCAACACATATAGCGCAATTGGTGATATCTTAAACAACCCAGCTGCTTA 899
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 847 CTATGTATACGGCAACACCTATAGCGCAATTGGTGACATCTTAAACAACCCAGCTGCTTA 906
Query 900 CGGATTTAGCGTAGTGGACAGGGCTTGTTGCGGGATTGGGAGGAACCAGGGACAAATCAC 959
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 907 CGGATTTAGCGTAGTAGACAGGGCTTGTTGCGGGATTGGGAGGAACCAAGGACAAATTAC 966
Query 960 ATGTCTGCCCG-GGCAAAATCCTTGTCCCAACAGGAGTCAGTATGTCTTTTGGGATGCAT 1018
||||||| ||| ||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct 967 ATGTCTG-CCGTTGCAGACTCCTTGTCCCAACAGAAATCAGTATGTCTTTTGGGATGCAT 1025
Query 1019 TCCATCCTACTCAGACTGCTAACTCCATTCTGGCTAGACGAGCTTTCTATGGTCCACCTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCCATCCTACTCAGACTGCTAACTCCATTCTGGCTAGACGAGCTTTCTATGGTCCACCTT 1085
Query 1079 CCGACGCATATCCTGTCAATGTCCAACAGATGACACTCCTTCACTAG 1125
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CCGACGCATATCCTGTCAATGTCCAACAGATGACACTCCTTCACTAG 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5