BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908764
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71696.2 | Symbols: SOL1 | carboxypeptidase D, putative | ch... 2338 0.0
> AT1G71696.2 | Symbols: SOL1 | carboxypeptidase D, putative |
chr1:26966887-26970572 FORWARD LENGTH=1793
Length=1793
Score = 2338 bits (1266), Expect = 0.0
Identities = 1410/1480 (95%), Gaps = 8/1480 (1%)
Strand=Plus/Plus
Query 1 ATGAGCAAGCTTAGATT-TGT-CAATAGTCTCCTAATTTCGACGGCGATCTGCTTTTTCC 58
||||||||||| ||||| | | ||| ||||||||||||||||| | ||||||||||||||
Sbjct 110 ATGAGCAAGCTCAGATTCT-TCCAA-AGTCTCCTAATTTCGACTGTGATCTGCTTTTTCC 167
Query 59 TTCCGTCGATCGCCGCTAGAGGTGGCCACTCCGACTATATCCACCCAGGTGATGGGAATT 118
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 168 TCCCGTCGATCAACGCTAGAGGCGGCCACTCCGACCATATCCACCCAGGTGATGGGAATT 227
Query 119 CTAGTTTTCATGGTACTGCGAGGAACCTATTTGCTCAAGAAGAGACT-CGACCGAGTTTG 177
|||||||||||||| || |||| || ||||||||||||||||| || | ||||||||||
Sbjct 228 ATAGTTTTCATGGTATTGTGAGGCACTTATTTGCTCAAGAAGAGCCTAC-ACCGAGTTTG 286
Query 178 GAATTAACTCGAGGTTATATGACTAATGATGATCTTGAGAAAGCAATGAAGGATTTCACC 237
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GAATTAACTCGAGGATATATGACTAATGATGATCTTGAGAAAGCAATGAAGGATTTCACC 346
Query 238 AAGAGATGTAGTAAGATTTCGAGATTATACAGCATCGGAAAGAGTGTCAATGGATTTCCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAGAGATGTAGTAAGATTTCGAGATTATACAGCATCGGAAAGAGTGTCAATGGATTTCCT 406
Query 298 TTGTGGGTCATAGAGATTTCAGACAGGCCTGGAGAGATAGAGGCTAAACCTGCATTCAAG 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 407 TTGTGGGTCATAGAGATTTCAGACAGGCCTGGAGAGATAGAGGCTGAACCTGCATTCAAG 466
Query 358 TACATTGGGAATGTACATGGAGATGAACCTGTCGGGCGTGAGCTCTTATTACGTCTTGCT 417
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 467 TACATTGGGAATGTACATGGAGATGAACCTGTAGGGCGTGAGCTCTTATTACGCCTTGCA 526
Query 418 AACTGGATTTGTGATAACTATAAGAAGGATCCGTTGGCTCAGATGATTGTAGAAAATGTT 477
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 527 AACTGGATTTGTGATAACTATAAGAAGGATCCATTGGCCCAGATGATTGTAGAAAATGTT 586
Query 478 CACCTTCACATAATGCCATCATTGAATCCAGATGGCTTTTCAACCAGGAAACGTAATAAT 537
|||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 587 CACCTTCATATAATGCCATCATTGAATCCTGATGGCTTTTCAATCAGGAAACGTAATAAT 646
Query 538 GCAAACAATGTGGATCTAAATCGCGACTTCCCTGACCAGTTCTTCTCCTTT-AATGAAGA 596
||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||
Sbjct 647 GCAAATAATGTGGATCTAAATCGCGACTTCCCTGATCAGTTCTT-TCCTTTCAATGACGA 705
Query 597 CTTGAGTTTGAGGCAACCGGAAACTAGGGCAATTATGACTTGGCTGAGAGATATACGATT 656
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 706 CTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATT 765
Query 657 CACAGCTTCGGCTACTCTGCACGGGGGTGCGCTGGTCGCAAATTTTCCATGGGATGGTAC 716
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CACAGCGTCGGCTACTCTGCACGGGGGTGCGCTGGTCGCAAATTTTCCATGGGATGGTAC 825
Query 717 AGATGATAAGAGGAAATACTATTATGCATGTCCTGATGATGAGACATTCCGGTTCTTGGC 776
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 826 AGAGGATAAAAGGAAATACTATTATGCATGTCCTGACGATGAGACATTCCGGTTCTTGGC 885
Query 777 ACGTATATATAGCAAATCTCACCGTAATATGTCTTTGAGCAAAGAATTTGAGGAAGGAAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ACGTATATATAGCAAATCTCACCGTAATATGTCTTTGAGCAAAGAATTTGAGGAAGGAAT 945
Query 837 CACAAATGGAGCATCCTGGTACCCAATTTATGGTGGCATGCAAGACTGGAATTACATACA 896
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 946 CACCAATGGAGCATCCTGGTACCCAATTTATGGTGGCATGCAAGACTGGAATTACATATA 1005
Query 897 TGGAGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAGAGCCTCAGA 956
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 TGGGGGATGCTTTGAATTGACTCTGGAAATAAGCGACAACAAGTGGCCTAAAGCCTCAGA 1065
Query 957 GCTTCCCACCATTTGGGATTACAATAGAAAGAGCATGCTGAATCTTGTTGCAAGCCTAGT 1016
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1066 GCTTTCCACCATTTGGGATTATAATAGAAAGAGCATGCTGAATCTTGTTGCAAGCTTAGT 1125
Query 1017 GAAGACAGGAGTTCATGGGAGGATCTTTTCATTAGACCAGGGAAAGCCACTGCCTGGCCT 1076
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1126 GAAGACAGGAGTTCATGGGCGGATCTTTTCATTAGACAAGGGAAAGCCACTGCCTGGGCT 1185
Query 1077 TGTCGTGGTCAATGGAATTAACTATACGGTTAAAGCTCATCAAACGTACGCAGACTATCA 1136
||| |||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1186 TGTTGTGGTCAAGGGAATTAATTATACGGTTAAAGCTCATCAAACATATGCAGACTATCA 1245
Query 1137 TCGGTTGCTTGCACCTGGACAGAAATATGAAGTCACAGCATCATCCCCAGGATACAAATC 1196
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TCGGTTGCTTGTACCTGGACAGAAATATGAAGTCACAGCATCATCCCCAGGATACAAATC 1305
Query 1197 GAAAACAACAACTGTTTGGTTAGGTGACAACGCTGTTAGCGCTGATTTCATTCTCATCCC 1256
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1306 GAAAACAACAACTGTTTGGTTAGGTGAAAACGCTGTTACCGCTGATTTCATTCTCATCCC 1365
Query 1257 AGAAACAAGTTCCCGAGGCAATCTACTGAGAAGCAGCTGCGACTGTAGCTGTAAAAGCTG 1316
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1366 AGAAACAAGTTCCCGAGGCAATCAACTGAGAAGCAGCTGCGACTGTAGCTGTAAAAGCTG 1425
Query 1317 CGGTCAGCCACTTCTAACGCAGTTTTTCACAGAGACAAATAATGGAATCACAATCACCCT 1376
||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1426 CGGTCAGCCGCTTCTAACGCAATTTTTCACAGAGACAAATAATGGAATCACGCTTACCCT 1485
Query 1377 TTTCGTGGTTGTAGTGTTCCTGTGTTTTTTGTTGCAAAGAAGGGTGAGGTTTAACCTATG 1436
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1486 ATTCGTGGTTGTAGTGTTCCTTTGTTTTTTGTTGCAAAGAAGGGTGAGATTCAACCTATG 1545
Query 1437 GAAGCAAAGACAATCCTCTAGAAGATCAATAACAGTATGA 1476
||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 GAAGCAAAGACAATCCTCTAGAAGATCAATAACAGTATGA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5