BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908768
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfa... 2196 0.0
> AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr1:26983721-26985990 FORWARD LENGTH=1623
Length=1623
Score = 2196 bits (1189), Expect = 0.0
Identities = 1409/1514 (93%), Gaps = 19/1514 (1%)
Strand=Plus/Plus
Query 1 ATGCAAACGCTTCTCTATCAGCCATGTAAGTCTCTTCCTATATTCACTTCTTCTTCTTCT 60
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||| || |
Sbjct 24 ATGCAAACGCTTCTCTGTCAGCCATGTAAGTCTCTTCCTATACTCACTGCTTCGTC--GT 81
Query 61 CCGTCGTCGTCGATTCGTAGCTCCGGCGATGCGAGAGAATGTATCTACTTTAAAGCATCG 120
||||||||| ||||||||||||||| |||| | ||||||||||| | |||| ||| |||
Sbjct 82 -CGTCGTCGTTGATTCGTAGCTCCGGTGATGTGCGAGAATGTATCGATTTTAGAGCGTCG 140
Query 121 GAGAAAGTATCGCAGTTTCAATTTCATGAAACCCTAAG-TCCTTTTCGGTTTCGTAGTTT 179
|||||||| ||| ||||||||||||||| ||||||||| ||||| | |||||| ||||
Sbjct 141 GAGAAAGTCTCGAAGTTTCAATTTCATGTAACCCTAAGCCCCTTTGC-CTTTCGTGGTTT 199
Query 180 CGCAATTTGTCGCGATTTTGCTACTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGA 239
| |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 200 CTCAATATGTCGCGAATTTGCTGTTCGTGGAGCTTATGGGATTAGATTTTGCTCACGAGA 259
Query 240 CGATGTTTCCGGTGTTGAAAATGGAGGAATTGTGGCGGAGGAGGAGCTTGAGCTATTGAA 299
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 260 AGATGTTTCCGGTGTTGGAAATGGAGGAATCGTGGCGGAGGAGGAGATTGAGCTATTGAA 319
Query 300 CAAGCCGAGTCCTGTACCGAAATCGGAAAATGAGAAGGAGAATGGTAAAGCAGACGATGA 359
|||||||| |||| |||| ||||| |||||| | |||||| ||||||||||||||||||
Sbjct 320 CAAGCCGAATCCTTTACCAAAATCAGAAAAT--G-AGGAGAGTGGTAAAGCAGACGATGA 376
Query 360 CGAGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCAGAAGGAGAAGGAGAGGGAGTTGA 419
|| ||||||||||||||||||||||||||||||||| |||| |||||| || ||| ||||
Sbjct 377 CGCGATTCTGGAGCCGTTTTTGAAATTCTTTAAACCGGAAGAAGAAGGGGAAGGAATTGA 436
Query 420 ATCGGAA------GAGGAGACGGATAGAGTCAGTGTAGAGTATTACGATCCCAAACCAGG 473
||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 437 ATCGGAAGTTTCGGATGAGACGGATAGAGTCAGCGTAGAGTATTATGATCCTAAACCAGG 496
Query 474 TGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAGTATCGG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 497 TGATTTTGTGGTTGGTGTTGTGGTTTCGGGTAATGAGAATAAGCTTGATGTGAATATTGG 556
Query 534 TGCGGATATGTTGGGAACTATGTTGACGAAAGAGATTCTTCCTTTGTATGATAAAGAGTT 593
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 557 TGCAGATATGTTGGGAACTATGTTGACGAAAGAGATACTTCCTTTGTATGATAAAGAGTT 616
Query 594 GGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAATTTTTGGTTAATGGGAAAAT 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 617 GGATTATTTGTTGTGTGATTTGAAGTATGATGCTGAAGAGTTTTTGGTTAATGGGAAAAT 676
Query 654 GGGGATTGTTAAGGATGATGATGATGAAGGTGTTGAAATTGCGGAATTTGCACGGCAAGG 713
|||||||||||| | |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 677 GGGGATTGTTAA-G--GATGATGATGAAGGTGTTGAGATTGCGGAGTTTGCTCGGCAAGG 733
Query 714 TAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCAGAGGTTTTAGGGAGGACGTTAAG 773
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 734 TAGGCCGGTGGTGGAGATTGGGACGGTTGTTTTCGCGGAGGTTTTAGGGAGGACGTTGAG 793
Query 774 TGGAAGACCTTTGCTTTCTTCTAGACGGTACTTTCGGAGAATCGCTTGGCACCGAGTGAG 833
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 794 TGGAAGACCTTTGCTTTCTTCTAGACGGTATTTTCGGAGAATCGCTTGGCACCGAGTGAG 853
Query 834 GCAGATTAAGCAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACAGGAGG 893
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 854 GCAGATCAAACAACTTAATGAGCCTATTGAAGTTAAGATAACAGAGTGGAATACTGGAGG 913
Query 894 ACTTCTCACCAGAATTGAGGGTTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAA 953
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 914 GCTTCTCACCAGAATTGAGGGCTTGAGAGCTTTTATTCCGAAGCAGGAACTGGTGAAGAA 973
Query 954 AGTGATCAGTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGACTCCTTGTGCAGATAAC 1013
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 974 AGTGAACACTTTCACCGAGTTGAAGGAAAACGTGGGTCGTAGATTCCTTGTGCAGATAAC 1033
Query 1014 GCGACTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCT 1073
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GCGATTGAACGAAGACAAAAACGACTTGATACTGAGTGAAAAAGTAGCCTGGGAGAAGCT 1093
Query 1074 GTACCTTCGAGAAGGAACACTATTAGAAGGAACAGTTGCCAAAATCTTACCATATGGAGC 1133
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1094 GTACCTTCGAGAAGGAACACTCTTAGAAGGAACAGTTGTCAAAATCTTACCATATGGAGC 1153
Query 1134 TCAAGTCAAACTCGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCG 1193
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TCAAGTCAAACTTGGGGATAGTAGCAGAAGTGGACTGCTACACATTTCAAACATAACTCG 1213
Query 1194 AAGAAGAATTGGATCGGTGAGCGATGTACTTCAGGTGGACGAAAGTGTAAAGGTTCTGGT 1253
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1214 AAGAAGAATTGGATCGGTGAGCGATGTGCTTCAGGTGGACGAAAGTGTAAAGGTTCTGGT 1273
Query 1254 TGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TGTGAAATCTCTATTTCCAGACAAGATCTCTCTTAGCATTGCTGATCTTGAAAGCGAACC 1333
Query 1314 GGGCTTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAGGCTGAAGAGATGGCAAAGAA 1373
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1334 AGGATTGTTCATCTCAGACAGAGAGAAAGTGTTTACGGAAGCTGAAGAGATGGCGAAGAA 1393
Query 1374 GTATAGAGAAAAGATGCCTTCGGTGACTACAAG-CGCGATATCTGATCATCCTCCAATCA 1432
||| |||||||| ||||||| |||| ||||||| | | || ||||||| |||||| ||||
Sbjct 1394 GTACAGAGAAAAAATGCCTTTGGTGGCTACAAGTC-CAATTTCTGATCGTCCTCCGATCA 1452
Query 1433 CAGGCAGTTTCCCTCAAGACAAGGATGAAGAAATCTATGCTAACTGGGACTGGGTCAAGT 1492
|| |||||||||| || | |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1453 CAAGCAGTTTCCCACAGGGCAAGGATGAAGAAATCTATGCTAACTGGGAGTGGTTCAAGT 1512
Query 1493 TCGAGAGTCAGTGA 1506
||||||||||||||
Sbjct 1513 TCGAGAGTCAGTGA 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5