BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908776
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 ... 2161 0.0
> AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64
| chr1:26999452-27002342 FORWARD LENGTH=1929
Length=1929
Score = 2161 bits (1170), Expect = 0.0
Identities = 1310/1379 (95%), Gaps = 4/1379 (0%)
Strand=Plus/Plus
Query 7 TCATCATCCCAACGACGCTGCGTTTTTGTTGGGAACATTCCTTACGACGCGACCGAGGAA 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TCATCATCCCAACGACGCTGCGTTTTTGTTGGGAACATTCCTTACGACGCGACCGAGGAA 223
Query 67 CAACTCAGAGAAATTTGTGGAGAGGTTGGACCTGTTGTCTCGTTTAGATTAGTTACGGAT 126
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 224 CAACTTAGAGAAATTTGTGGAGAAGTTGGACCTGTTGTCTCGTTTAGATTAGTTACGGAT 283
Query 127 AGAGAAACTGGTAAACCAAAAGGCTACGGATTTTGTGAGTATAAAGACGAAGAAACAGCA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 AGAGAAACTGGTAAACCAAAAGGCTACGGATTTTGTGAGTATAAAGACGAAGAAACAGCA 343
Query 187 TTGAGTGCTCGTCGTAATCTTCAAAGTTATGAAATCAATGGTCGTCAATTAAGAGTTGAT 246
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 344 TTAAGTGCTCGTCGTAATCTTCAGAGTTATGAAATCAATGGTCGTCAATTAAGAGTTGAT 403
Query 247 TTTGCTGAGAATGACAAAGGCACTGACAAAACCCGTGATCAGAGTCAAGGAGGATCTGGT 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 404 TTTGCTGAGAATGACAAAGGCACTGACAAAACCCGTGATCAGAGTCAAGGAGGACCTGGT 463
Query 307 TTGCCTTCTACTTCTG-TAATGACAGAGTCTCAGAAGCAGATTGGAGGGCCTGGAGATAC 365
||||| |||||| || | ||||||||||||| ||||||||||||||||| | |||| |
Sbjct 464 TTGCCATCTACTACTACTG-TGACAGAGTCTCAAAAGCAGATTGGAGGGCCAGTAGATTC 522
Query 366 AAATATGCACCAGCCCGTTGGTCTCAATGTTGCTATAACAGCTGCATCTGTTATGGCGGG 425
||||||||| ||||| ||||||||| | |||||| |||||||||||||||||| |||||
Sbjct 523 AAATATGCATCAGCCAGTTGGTCTCCACCTTGCTACAACAGCTGCATCTGTTATAGCGGG 582
Query 426 TGCGCTAGGTGGTCCTCAGGTCGGTTCGCAGTTTACACAAAGTAATCTGCAGGTTCCAGC 485
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 583 TGCGCTAGGTGGTCCTCAGGTCGGTTCGCAGTTTACGCAAAGTAATCTGCAGGTTCCAGC 642
Query 486 TAGTGATCCCCTGACTCTTCATCTTGCCAAGATGTCTAGAAGTCAGCTTACTGAAATTAT 545
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 643 TAGTGATCCCCTGGCTCTTCATCTAGCCAAGATGTCAAGAAGTCAGCTTACTGAAATTAT 702
Query 546 ATCGTCCATTAAGTTAATGGCTACACAGAACAAGGAACAAGCTCGACAGTTGTTGGTATC 605
||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||| ||
Sbjct 703 ATCGTCCATTAAGTTAATGGCTACACAAAATAAGGAACATGCTAGACAGTTGTTGGTTTC 762
Query 606 AAGACCTCAGTTGCTTAAAGCTGTTTTCCTGGCGCAGATAATGCTTGGGATTGTGAGTCC 665
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 763 AAGACCTCAGTTGCTAAAAGCTGTTTTCCTGGCGCAGGTAATGCTTGGGATTGTGAGTCC 822
Query 666 GCAAGTCTTGCAGTCGCCAAATATTGTTCAGGCCCCAAGTCATATGACAGGGTCTTCAAT 725
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GCAAGTGTTACAGTCGCCAAATATTGTTCAGGCCCCAAGTCATATGACAGGGTCTTCAAT 882
Query 726 TCAAGACACGCAATTATCTGGTCAAAATCTTTTACCGCCACTGGCTCAAAGGTCGCAGCA 785
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 883 TCAAGATGCGCAATTATCTGGTCAAAACCTTTTACCGCCACTGGCACAAAGGTCACAGCA 942
Query 786 GCTAAGTCGTGCTCCCCAGAGTCAGTATCCTGTTCAACAATCTTCTAAACAACCTTTTAG 845
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 943 GCTAAGTCGTGCTCCCCATAGTCAGTATCCTGTCCAGCAATCTTCTAAACAACCTTTTAG 1002
Query 846 TCAGATTCCACAACTAGTAGCACAGCCAGGTCCTTCTTCTGTGAATCCTGCTCCTAGATC 905
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1003 TCAGATTCCACAACTAGTAGCACAACCAGGTCCTTCTTCTGTGAATCCTCCTCCTAGATC 1062
Query 906 CCAAGTTAAAGGCGAAA-CAGCTCCATTCCAACGCCAGCAAGGGGTTCCAGCTTCCACCA 964
||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1063 CCAAGTTAAAGTCGAAAAC-GCTCCATTCCAACGCCAGCAAGTGGTTCCAGCTTCCACCA 1121
Query 965 ACATAGGTTACAGTAGTCAGACTTCAGTTCCGAATAATGCTATCCAGCCATCTCAAGTAC 1024
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ACATAGGTTATAGTAGTCAGAATTCAGTTCCGAATAATGCTATCCAGCCATCTCAAGTAC 1181
Query 1025 CCCACCCAGCATTAACAAATTCTGTGATGCAGCAAGGTGGGCAAACGGTATCATTAAATT 1084
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CCCACCAAGCATTACCAAATTCTGTGATGCAGCAAGGTGGGCAAACGGTATCATTAAATT 1241
Query 1085 ATGGCAAAAGAATAAACGAGGGTCCTCCTCATCAATCAATGAACAGACCATCAAAGATGA 1144
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TTGGCAAAAGAATAAACGAGGGTCCTCCTCATCAATCAATGAACAGACCATCAAAGATGA 1301
Query 1145 TGAAAGTGGATGATAGGAGAACCACTTCACACCCCGGAGGCCATGCGTCTAATTCAATGC 1204
|||||||||| ||||||||||| ||||||| ||| ||||| |||| ||||||||||||||
Sbjct 1302 TGAAAGTGGAGGATAGGAGAACTACTTCACTCCCTGGAGGTCATGTGTCTAATTCAATGC 1361
Query 1205 TTCCGAATCAAGTACAAGCTCCCCAGACACGTATCTCCCCCGATGTCCAGTCAACATTGC 1264
|||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1362 TTCCGAATCAAGCACAAGCTCCCCAGACACATATCTCTCCCGATGTTCAGTCAACATTGC 1421
Query 1265 TCCAGCAAGTAATGAACCTTACGCCAGAACAGCTGAGATTGCTGACTCCAGAGCAACAGC 1324
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 1422 TCCAGCAAGTAATGAACCTTACGCCAGAACAGTTGAGATTACTGACTCCAGAGCAACAAC 1481
Query 1325 AAGAGGTCTTAAAGCTGCAACAAGCGCTCAAGCAAGACCACATGATGCAGCTTTCATAG 1383
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1482 AAGAGGTCTTAAAGCTGCAACAAGCCCTCAAGCAAGACCACATGATGCAGCCTTCATAG 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5