BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908800
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71980.1 | Symbols: | Protease-associated (PA) RING/U-box z... 2060 0.0
AT1G22670.1 | Symbols: | Protease-associated (PA) RING/U-box z... 185 8e-46
> AT1G71980.1 | Symbols: | Protease-associated (PA) RING/U-box
zinc finger family protein | chr1:27097903-27100139 FORWARD
LENGTH=1952
Length=1952
Score = 2060 bits (1115), Expect = 0.0
Identities = 1271/1348 (94%), Gaps = 4/1348 (0%)
Strand=Plus/Plus
Query 1 ATGAATCGTGCTTTGGTCCTACTTTTATACGTTTATACTGTTTCTTGTTTAGCTTCAAGC 60
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 348 ATGAATCGTGCTTTGGTCCTACTTTTATATGTTTGTACTGTTTCTTGTTTAGCTTCAAGC 407
Query 61 AAAGTTATTTTGATGAGGAACAACATCACTCTCTCTTTTGATGACATCGAAGCTAATTTC 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 408 AAAGTTATTTTGATGAGGAATAACATCACTCTCTCTTTTGATGACATCGAAGCTAACTTC 467
Query 121 GCTCCGTCAGTGAAGGGTACAGGTGAAATTGGAGTAGTTTATGTGGCAGAGCCTCTTGAC 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 468 GCTCCGTCAGTGAAGGGTACAGGTGAAATTGGAGTGGTTTATGTGGCTGAGCCTCTTGAC 527
Query 181 GCTTGTCAAAATCTTATGAATAAGCCAGAACAGAGCTCCAATGAAACTTCCCCTTTTGTG 240
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 528 GCTTGTCAAAATCTTATGAATAAACCAGAACAGAGCTCCAATGAAACTTCTCCTTTTGTG 587
Query 241 TTGATCGGTAGAGGAGGCTGTAGTTTTGAAGAGAAAGTGAGAAAAGCGCAGAGAGCTGGT 300
||||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 588 TTGATTGTTAGAGGAGGCTGTAGTTTTGAAGAGAAAGTTAGAAAAGCTCAGAGAGCTGGT 647
Query 301 TTTAAAGCTGCCATTATCTTTGACAATGAAGACCGTGGAACATTGATTGCAATGGCAGGT 360
|| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 TTCAAAGCTGCTATTATCTATGACAATGAAGACCGTGGAACATTGATAGCAATGGCAGGT 707
Query 361 AACTCGGGAGGTATAAAGATTCATGCGGT-TTTCGTTACGAAAGAAACGGGAGAAGTGTT 419
||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 708 AACTCTGGAGGTATAAGGATTCATGCGGTCTTT-GTTACGAAAGAAACGGGAGAAGTTTT 766
Query 420 GAAGGATTATGCGGGTTTTCCCGATACGAAAGTTTGGTTGATTCCAAGTTTTGAGAACTC 479
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 767 AAAGGAGTATGCGGGTTTCCCCGATACGAAAGTTTGGTTGATCCCAAGTTTTGAGAACTC 826
Query 480 GGCGTGGTCGATTATGGCGGTTTCATTCATTTCGCTGCTTGCGATGTCGGCTGTTCTCGC 539
||||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct 827 GGCGTGGTCTATTATGGCGGTTTCGTTTATCTCGCTGCTTGCAATGTCGGCTGTTCTCGC 886
Query 540 TACTTGTTTCTTTGTGCGTAGGCATCGGATAAGAAGGCGGACATCTCGGTCCTCTCGAGT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 887 TACTTGTTTCTTTGTGCGTAGGCATCGAATAAGAAGGCGGACATCTCGGTCCTCTCGAGT 946
Query 600 CCGTGAGTTCCATGGTATGAGCCGCCGCTTGGTTAAAGCAATGCCGAGTCTTATATTCTC 659
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 947 GCGTGAGTTTCACGGTATGAGCCGCCGCTTGGTGAAAGCAATGCCGAGTCTTATATTCAG 1006
Query 660 TTCGTTTCACGAAGACAATACTACTGCATTTACTTGCGCTATTTGCCTCGAAGACTACAT 719
||||||||| ||||| || ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1007 TTCGTTTCATGAAGATAACACTACTGCATTCACTTGTGCTATTTGCCTTGAAGACTACAC 1066
Query 720 TGTTGGAGACAAGCTCAGGCTCTTACCTTGCTGTCACAAGTTTCATGCTGTGTGTGTTGA 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1067 TGTTGGAGACAAGCTCAGGCTCTTACCTTGCTGTCACAAGTTTCATGCTGCGTGTGTTGA 1126
Query 780 CTCGTGGTTAACCTCTTGGAGAACTTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAA 839
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CTCATGGTTAACCTCTTGGAGAACTTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAG 1186
Query 840 CACGGGCGAGCCTCCGGCTTCAGAGAGCACGCCATTGCTCTCATCCGCTGCATCGTCTTT 899
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1187 CACGGGAGAGCCTCCAGCTTCAGAGAGCACGCCATTGCTCTCATCTGCTGCATCGTCTTT 1246
Query 900 CAACT-CTTCCTCTCTGCACTCTTCCGTCAGATCATCCGCACTATTGATTGGTCCTTCCA 958
|| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1247 CA-CTTCTTCCTCTCTGCACTCTTCAGTCAGATCATCTGCACTATTGATTGGTCCTTCCT 1305
Query 959 TGGGCTCATTACCGTCTTCAATCTCTTTCTCTCCCGCATACGCGAGCTCATCCTATATCA 1018
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1306 TGGGCTCATTACCAACTTCAATCTCTTTCTCTCCCGCATACGCAAGCTCATCCTATATTA 1365
Query 1019 GACAATCGTTCCAGTCTTCCTCTAACCGTCGATCTCCTCCAATAAGCGTAAGTCGAAGCT 1078
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1366 GACAATCATTCCAGTCTTCCTCTAACCGTCGATCACCTCCAATAAGCGTAAGTCGAAGCT 1425
Query 1079 CTGTGGATCTAAGGCAACAAGCAGCATCTCCATCACCATCACCATCACAGAGATCATACA 1138
| |||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1426 CAGTGGATCTCAGACAACAAGCAGCTTCTCCATCTCCATCACCATCACAGAGATCATACA 1485
Query 1139 TTTCCCATATGGCTTCTCCACAGTCACTGGGTTACCCGACTATCTCCCCTTTCAACACGA 1198
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1486 TTTCCCATATGGCTTCTCCACAGTCACTAGGTTACCCAACTATCTCCCCTTTCAACACGA 1545
Query 1199 GGTACATGTCACCGTACAGGCCTAGCCCGAGCAATGCATCGCCTGCAGTGGCCGGATCAT 1258
|||||||||||||||| || |||||||||||||||||||| |||||| |||| |||||||
Sbjct 1546 GGTACATGTCACCGTATAGACCTAGCCCGAGCAATGCATCACCTGCAATGGCTGGATCAT 1605
Query 1259 CAAATTATCCATTCAATCCACTGCGTTACAGTGAATCAGCCGGAACTTTCTCTCCATACG 1318
| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1606 CGAATTATCCGTTGAATCCACTGCGTTACAGTGAATCAGCTGGAACTTTCTCTCCATACG 1665
Query 1319 CCTCTGCAAACTCGCTTCCAGACTGTTA 1346
||||||||||||||||||||||||||||
Sbjct 1666 CCTCTGCAAACTCGCTTCCAGACTGTTA 1693
> AT1G22670.1 | Symbols: | Protease-associated (PA) RING/U-box
zinc finger family protein | chr1:8021854-8023516 REVERSE LENGTH=1269
Length=1269
Score = 185 bits (100), Expect = 8e-46
Identities = 208/258 (81%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 630 GGTTAAAGCAATGCCGAGTCTTATATTCTCTTCGTTTC-ACGA-AGACAATACTACTGCA 687
||| ||||||||||||||| ||| |||| ||| | | | | | |||||| ||||| |
Sbjct 630 GGTGAAAGCAATGCCGAGTGTTACATTCACTT-G-TGCAAAAATAGACAACACTACAG-G 686
Query 688 TTT-ACTTGCGCTATTTGCCTCGAAGACTACATTGTTGGAGACAAGCTCAGGCTCTTACC 746
||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 687 TTTCTCTTGCGCTATCTGCCTTGAAGACTACATTGTTGGAGACAAGCTCAGGGTCTTACC 746
Query 747 TTGCTGTCACAAGTTTCATG-CTG-TGTGTGTTGACTCGTGG-TTA-ACCTCTTGGAGAA 802
|||| ||||||||||||||| | | | || || ||||||||| ||| | || |||||||
Sbjct 747 TTGCAGTCACAAGTTTCATGTC-GCT-TGCGTAGACTCGTGGCTTATA--TCATGGAGAA 802
Query 803 C-TTTCTGTCCGGTGTGCAAACGAGATGCAAGAACGAACACGGGCGAGCCTCCGGCTTCA 861
| ||| ||||| ||||| ||||| ||||| ||||||| | | | ||||| | ||| ||
Sbjct 803 CGTTT-TGTCCAGTGTGTAAACGGGATGCGAGAACGACCGCAGATGAGCCACTAGCTACA 861
Query 862 GAGAGCACGCCATTGCTC 879
|||||||| || || |||
Sbjct 862 GAGAGCACACCGTTTCTC 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5