BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908810

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   241    3e-63


> AT1G72080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other 
Eukaryotes - 2996 (source: NCBI BLink). | chr1:27120264-27122761 
REVERSE LENGTH=775
Length=775

 Score =  241 bits (130),  Expect = 3e-63
 Identities = 186/212 (88%), Gaps = 7/212 (3%)
 Strand=Plus/Plus

Query  64   CATTTGACCATGCAAATTGAACCACCCTCTACCATAGTTGACACAGAGAATGATAATGAG  123
            |||||||||||||||||||||||||| ||||||||| || ||| |||||||| || ||| 
Sbjct  514  CATTTGACCATGCAAATTGAACCACCATCTACCATAATTAACAGAGAGAATGGTACTGAT  573

Query  124  GCCAACGACAACGTTGTGGAAGTTACTAATATAGAGAGTGGA-TGTAAAATTGATGAAAC  182
            ||||||||||||||||||| ||||| ||| ||||||||| || |||||||||||||||||
Sbjct  574  GCCAACGACAACGTTGTGGCAGTTAATAACATAGAGAGT-GATTGTAAAATTGATGAAAC  632

Query  183  AGTTCCTCCTAAAACTGACGAAGAGATCTTAGGAGATATAGACGACGATCTCC-TCAGTT  241
            |||||||||||||||||||||||||||||||| ||||  ||  |||||| ||| | ||||
Sbjct  633  AGTTCCTCCTAAAACTGACGAAGAGATCTTAGAAGATG-AG--GACGATATCCGT-AGTT  688

Query  242  TAATGCATGAACTCCCACCTCAATCGATGTTT  273
            || || || ||||||||  || ||||||||||
Sbjct  689  TATTGGATAAACTCCCAATTCCATCGATGTTT  720



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5