BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908864

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72530.2 | Symbols:  | plastid developmental protein DAG, pu...   832    0.0  


> AT1G72530.2 | Symbols:  | plastid developmental protein DAG, 
putative | chr1:27312999-27313937 FORWARD LENGTH=579
Length=579

 Score =  832 bits (450),  Expect = 0.0
 Identities = 540/581 (93%), Gaps = 16/581 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGAGGATCATCAGAAGACCGTTAAATTTGACGGCGGCCGTCCGGTTCCGACTTGT-  59
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  1    ATGGCGAGGATCATCAGAAGACCGTTAAATTTGACGGCGGCCGTCCGGTTCCGACTT-TC  59

Query  60   TCCGTTATCTCCATTCTCCGGTAACTCTGGTTCCGTTAACTCGGGTACGACTCGTTGCTC  119
            |||||| ||||||||||||||||||||||||||  |||||||||  |||||| |||| ||
Sbjct  60   TCCGTTGTCTCCATTCTCCGGTAACTCTGGTTCTATTAACTCGGAAACGACTAGTTGGTC  119

Query  120  TGAGTTAATTCGAGTATCGAGTTTAGTCGAGGGATGCGATTACAAGCACTGGCTGGTTCT  179
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TGAGTTAATTCGAGTACCGAGTTTAGTCGAGGGATGCGATTACAAGCACTGGCTGGTTCT  179

Query  180  CATGAAGCCTCCCAATGGATACCCAACTCGAAATCACATCGTCCAACGCTTTGTCGAAAC  239
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  180  CATGAAGCCTCCCAATGGATACCCAACTCGAAATCACATTGTCCAAAGCTTTGTCGAAAC  239

Query  240  CCTAGCCATGGCTCTAGGGAGCGAAGAAGAAGCTAAAAAATCGATATACTCTGTATCTAC  299
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  240  CCTAGCCATGGCTCTAGGGAGCGAAGAAGAAGCTAAGAGATCGATATACTCTGTATCTAC  299

Query  300  AAAGTACTACTATGCATTTGGCTGCAGGGTTCATGAACCTTTGACTTACAAGATTAGATC  359
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  300  AAAGTACTACTATGCATTTGGCTGCAGGATTCATGAACCTTTGACTTACAAGATTAGATC  359

Query  360  TCTGCCTGATGTTAAATGGGTTTTACCAGATTCGTATATTGTGGATGGTGACAATAGATA  419
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  360  TCTGCCTGATGTTAAATGGGTTTTACCAGATTCGTTTATAGTGGATGGTGACAATAGATA  419

Query  420  TGGAG--------G-AG-AG--CCGTTTGTCGATGGAGAGGTCGTTCCATATGATGAGAA  467
             ||||        | || ||  ||||||||||||||||| || ||||| |||||||||||
Sbjct  420  CGGAGTTTTTTTTGCAGGAGAGCCGTTTGTCGATGGAGAAGTTGTTCCGTATGATGAGAA  479

Query  468  GTATCATGCGGACTGGCTACGAGATCAAACTGATGATGATGCTAATAACCG-AGTAGTCA  526
            |||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct  480  GTATCATGCGGACTGGCTACGAGATCAAACTGATGAGGATGCTAA-AAGCGGAGTAGTCA  538

Query  527  AGAAGAAGCCTAGGAGGAAAACAAAGAAGAAGTTGATCTAA  567
            | ||||||| ||||||||||| ||||||||||||||| |||
Sbjct  539  AAAAGAAGCATAGGAGGAAAAGAAAGAAGAAGTTGATTTAA  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5