BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908865
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72540.1 | Symbols: | Protein kinase superfamily protein | ... 2289 0.0
> AT1G72540.1 | Symbols: | Protein kinase superfamily protein
| chr1:27314932-27316669 REVERSE LENGTH=1353
Length=1353
Score = 2289 bits (1239), Expect = 0.0
Identities = 1317/1355 (97%), Gaps = 4/1355 (0%)
Strand=Plus/Plus
Query 1 ATGAGATTTTCTTGGAAGAATATATGTCTTCCCATAAGCTGCATCAAAAACACAAACCAG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGATTTTCTTGGAAGAATATATGTCTTCCCATAAGCTGCATCAATAACACAAACCAG 60
Query 61 AAGAAGACTACAACAACAAACCCATCAAAGGAAAAACTTCTTCTTCTCTCCAGACAAACC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAGACTACAACAACAAACCCACCAAAGGAAAAACTTCTTCTTCTCTCCAGACAAACC 120
Query 121 TCTGTTCCAAGCAGAGTCTATATGTCGGATTTCAGCAATTCAACCATCTCACTCAACGAC 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TCTGTTCCAAGCAGAGTCTACATGTCCGATTTCAGCAATTCAACCATCTCACTCAACGAC 180
Query 181 TTCTCAAACTCTTTCTTCATAAACATTCACATCTTCACCTACGAAGAGCTCAAAACGATC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTCTCAAACTCTTTCTTCATAAACATTCACATATTCACCTACGAAGAGCTCAAAACGATC 240
Query 241 ACACAAGGCTTCTCAAAGTATAATTTCCTCGGTGAAGGAGGATTCGGGGAAGTCTTCAAA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 241 ACACAAGGCTTCTCAAAGTATAATTTCCTCGGTGAAGGAGGTTTCGGGGAAGTCTACAAA 300
Query 301 GGTTTTGTTGATGATAGCTTCAAGACTGGTTTGAAAGCTCAGCCTGTTGCTGTTAAGGCA 360
||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GGTTTCGTTGATGATAGCCTCAAGACTGGTTTGAAAGATCAGCCTGTTGCTGTTAAGGCT 360
Query 361 TTGAAACGAGAAGGTGGACAAGGCCATAGAGAGTGGCTGGCTGAAGTTATAATCCTTGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGAAACGAGAAGGTGGACAAGGCCATAGAGAGTGGCTGGCTGAAGTTATAATCCTTGGT 420
Query 421 CAGTTGAAGCATCCACATCTGGTGAATTTGGTCGGATACTGCTGTGAGGACGATGAGAGG 480
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 421 CAGTTGAAGCATCCACATCTGGTAAATTTGGTCGGATACTGCTGTGAGGATGATGAGAGG 480
Query 481 CTTCTAGTCTACGAGTACATGGAACGAGGCAATCTGGAAGACCATTTATTTCAAAAGTAT 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTCTAGTATACGAGTACATGGAACGAGGCAATCTGGAAGACCATTTATTTCAAAAGTAT 540
Query 541 GGTGGAGCCTTGCCTTGGTTAACAAGAGTGAAGATTCTACTTGGTGCTGCGAAAGGCCTT 600
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 541 GGTGGAGCCTTGCCTTGGTTAACAAGAGTGAAGATTCTTCTAGGTGCTGCGAAAGGCCTT 600
Query 601 GAGTTCCTTCACAAACAAGAGAAACCTGTCATATACAGAGATTTTAAGCCTTCCAACATC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGTTCCTTCACAAACAAGAGAAACCTGTCATATACAGAGATTTTAAGCCTTCCAACATC 660
Query 661 CTCTTGAGCTCGGACTTCAGCTCTAAGCTTTCAGATTTCGGCTTAGCCACAGATGGATCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCTTGAGCTCGGACTTCAGCTCTAAGCTTTCAGATTTCGGCTTAGCCACAGATGGATCA 720
Query 721 GAGGAAGAAGACTCAAACTTTACCAAAAGTGTAATGGGCACAGAAGGCTATGCAGCTCCA 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GAGGAAGAAGACTCAAACTTTACCAAAAGTGTAATGGGCACAGAAGGATATGCAGCTCCA 780
Query 781 GAATACATCTCAGCAGGTCAGT-TGACGACAATGAGCGACGTGTTCAGTTTCGGGGTGGT 839
|||||||||||||||||| | | ||||||||||||| |||||||||||||| ||||||||
Sbjct 781 GAATACATCTCAGCAGGT-AATCTGACGACAATGAGTGACGTGTTCAGTTTTGGGGTGGT 839
Query 840 GCTTTTGGAGATGCTAACAGCTAGAAAGGCAGTGGAGAAGTACCGGGCACAGAGAGGGAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTTTTGGAGATGCTAACAGCTAGAAAGGCAGTGGAGAAGTACCGGGCACAGAGAGGGAG 899
Query 900 GAACCTAGTGGAATGGGCAAGACCCATGTTAAAGGATCCCAACAAGCTTGAACGGATCAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAACCTAGTGGAATGGGCAAGACCCATGTTAAAGGATCCCAACAAGCTTGAACGGATCAT 959
Query 960 AGACCCGAGTCTCGAAGGAAAATACTCGGTTGAAGGCATCAGAAAGGCAGCTGCTTTGGC 1019
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 AGACCCGAGTCTCGAAGGGAAATACTCGGTAGAAGGCATCAGAAAGGCAGCTGCTTTGGC 1019
Query 1020 TTACCAGTGCCTGAGCCACAACCCTAAGTCACGACCAACTATGACCACTGTGGTTAAGAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 TTACCAGTGCCTGAGCCACAACCCTAAGTCACGACCAACTATGACCACTGTGGTTAAAAC 1079
Query 1080 CCTAGAGCCTATTCTAGACCTCAAAGACATCCAAAACGGACCGTTTGTGTACATCGTTCC 1139
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1080 CCTAGAGCCTATTCTAGACCTCAAAGATATCCAAAACGGACCGTTTGTGTACATTGTTCC 1139
Query 1140 AGTAGCAGGT-TCAAATGAAGTTCATGACCTCAAAAGTAAGGATGATGTCAAAGTCGTAA 1198
|||||||||| | || |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1140 AGTAGCAGGTGT-AAGTGAAGTTCATGAGATCAAATGTAAGGATGATGTCAAAGTCGTAA 1198
Query 1199 AAGATGAAACAGAGAAGGAGGCAAAAGTCTTCCCACGACACCGAGCAGGTCGAAGGAACA 1258
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AAGAGGAAACAGAGAAGGACGCAAAAGTCTTCCCACGACACCGAGCAGGTCGAAGGAACA 1258
Query 1259 GACGTAAACACAAGGCAATGAGGTCTCGTGCAGTATATTCAGACACTGCTCTATACAAGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GACGTAAACACAAGGCAATGAGGTCTCGTGCAGTATATTCAGACACTGCTCTATACAAGA 1318
Query 1319 GTCTAGGAACCAGTTTATATACCCCGGCCAACTAA 1353
||||||||||||||||||||| || |||||||||
Sbjct 1319 GTCTAGGAACCAGTTTATATAATCCAGCCAACTAA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5