BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908883
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2089 0.0
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic transla... 955 0.0
> AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27377798-27380182 REVERSE LENGTH=1667
Length=1667
Score = 2089 bits (1131), Expect = 0.0
Identities = 1207/1245 (97%), Gaps = 0/1245 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGAATGGCGTCTGATGGAACACAATATGATCCTCGTCAGTTTGATACTAAGATG 60
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCAGGAATGGCATCTGATGGAACTCAATATGATCCTCGTCAGTTTGATACTAAGATG 240
Query 61 AATGCCGTACTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGC 120
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATGCCATTCTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGC 300
Query 121 GATAGCTTTGATGCAATGGAATTGAAACCAGATCTTCTTAGGGGTATTTATGCTTATGGT 180
|| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 301 GACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATTTATGCTTACGGT 360
Query 181 TTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTATTCCATTCTGCAAGGGTCTTGAT 240
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TTCGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATTATTCCATTCTGCAAGGGTCTTGAT 420
Query 241 GTCATCCAGCAAGCTCAATCTGGAACTGGAAAGACCGCTACCTTTTGCTCTGGTGTTTTA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGATCCAGCAAGCTCAATCTGGAACTGGAAAGACCGCTACCTTTTGCTCTGGTGTTTTA 480
Query 301 CAGCAGCTCGATATTAGTTTGGTTCAATGCCAAGCTCTTGTTTTGGCTCCTACCCGAGAA 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CAGCAGCTCGATATTAGTTTGGTTCAATGCCAAGCTCTTGTTTTGGCACCTACCCGAGAA 540
Query 361 CTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTATCTTGGCGTCAAGGCT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTACCTTGGCGTCAAGGCT 600
Query 421 CAGGCTTGTGTTGGTGGAACTAGTGTTCGTGAGGATCAACGCGTTCTTCAGTCTGGTGTT 480
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CAGGCTTGTGTTGGTGGAACAAGTGTTCGTGAGGATCAACGTGTTCTTCAGTCTGGTGTT 660
Query 481 CATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACTTGTTGCGTAGACAATCCCTCCGC 540
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 661 CATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACTTGTTACGCAGACAATCCCTCCGT 720
Query 541 GCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTC 780
Query 601 AAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTCGGTGTTTTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 AAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTTGGTGTTTTC 840
Query 661 TCTGCTACAATGCCACCCGAAGCCCTTGAGATCACAAGGAAGTTTATGAACAAACCAGTC 720
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGAACAAACCAGTC 900
Query 721 AGGATTCTGGTCAAGCGAGACGAGCTGACTCTGGAAGGTATTAAGCAGTTTTATGTCAAT 780
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 901 AGGATTCTGGTCAAGCGAGACGAGCTGACTCTTGAAGGTATCAAGCAGTTTTATGTCAAT 960
Query 781 GTAGACAAGGAAGAGTGGAAACTCGAGACACTATGTGATCTCTACGAGACACTGGCCATC 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 GTAGACAAGGAAGAGTGGAAACTCGAGACACTATGCGATCTCTACGAGACACTGGCCATC 1020
Query 841 ACGCAAAGTGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACCGACAAAATG 900
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTCAAAGCGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACCGACAAAATG 1080
Query 901 AGAAGCCGTGACCACACTGTCTCAGCCACACACGGAGACATGGACCAGAACACAAGAGAC 960
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 AGAAGCCGTGACCACACTGTTTCAGCTACACACGGAGACATGGACCAGAACACAAGAGAC 1140
Query 961 ATCATCATGCGCGAATTCCGCTCTGGATCTTCCCGCGTCCTCATAACCACTGACCTTCTT 1020
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1141 ATCATCATGCGCGAATTCCGCTCTGGGTCTTCCCGTGTCCTCATAACCACTGACCTCCTT 1200
Query 1021 GCTCGTGGTATTGATGTTCAGCAAGTCTCTCTTGTCATAAACTTTGACCTCCCAACCCAA 1080
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 GCTCGTGGTATCGATGTTCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACCCAA 1260
Query 1081 CCGGAGAATTACCTTCACCGTATTGGAAGAAGTGGAAGGTTTGGAAGAAAGGGAGTGGCA 1140
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1261 CCGGAGAATTACCTTCATCGTATTGGAAGAAGTGGAAGGTTTGGGAGAAAGGGAGTAGCA 1320
Query 1141 ATCAATTTCATGACAACGGAGGATGAGAGAATGTTGGCTGATATTCAGAGGTTTTACAAT 1200
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1321 ATCAATTTCATGACATCGGAGGATGAGAGAATGATGGCTGATATTCAGAGGTTTTACAAT 1380
Query 1201 GTGGTCGTTGAGGAGTTGCCAAGCAATGTTGCTGATCTTCTCTGA 1245
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTGGTCGTTGAGGAGTTGCCAAGCAATGTTGCTGATCTTCTCTGA 1425
> AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592256-4594962 REVERSE
LENGTH=1764
Length=1764
Score = 955 bits (517), Expect = 0.0
Identities = 899/1083 (83%), Gaps = 28/1083 (3%)
Strand=Plus/Plus
Query 105 CTATGACGAAGTTTGCGATAGCTTTGATGCAAT-GGAATTGAAACCAG-ATCTTCTTAGG 162
|||||| || ||| || ||||||||||| || || || || || | ||||| |||
Sbjct 285 CTATGATGATGTTCATGAGAGCTTTGATGCCATGGGTCTT-CAA-GAGAACCTTCTCAGG 342
Query 163 GGTATTTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTATTCCA 222
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 343 GGTATTTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCC 402
Query 223 TTCTGCAAGGGTCTTGATGTCATCCAGCAAGCTCAATCTGGAACTGG-AAAGACCGCTAC 281
||||| |||||||||||||| || || || ||||| ||||| ||||| ||| || || ||
Sbjct 403 TTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAA-ACAGCAAC 461
Query 282 CTTT-TGCTCTGGTGTTTTACAGCAGCTCGA-TAT-TAGTTTGGTTCAATGCCAAGCTCT 338
||| ||||||||||| || |||||||| || | | | || | || || || ||| |
Sbjct 462 -TTTCTGCTCTGGTGTCTTGCAGCAGCTGGACT-TCTCCCTTA-TCCAGTGTCAGGCT-T 517
Query 339 TGTTT-TGGCTCCTACCCGAGAACTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTG 397
|| || | ||||| || |||| ||||| ||||||||||| ||||| |||||||| ||||
Sbjct 518 TGGTTCTAGCTCCAACTAGAGAGCTTGCTCAGCAAATTGAGAAGGTCATGAGGGCCCTTG 577
Query 398 GTGACTATCTTGGCGTCAAGGCTCAGGCTTGTGTTGGTGGAACTAGTGTTCGTGAGGATC 457
|||| || ||||| ||||||| ||| || |||||||||||||| ||||| ||||||||||
Sbjct 578 GTGATTACCTTGGTGTCAAGGTTCACGCCTGTGTTGGTGGAACCAGTGTCCGTGAGGATC 637
Query 458 AACGCGTTCTTCA-GTCTGGTGTTCATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGAC 516
| ||| | || || | ||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 638 AGCGCATCCTCCAAG-CTGGTGTCCATGTTGTTGTTGGAACTCCAGGGCGTGTCTTTGAC 696
Query 517 TTGTTGC-GTAGACAATCCCTCCGCGCTGATG-CAATCAAAATGTTTGTTCTTGATGAAG 574
||||| | || || || || || ||||| || |||| ||||||||||| |||||||
Sbjct 697 ATGTTGAAG-AGGCAGTCTCTTCGTGCTGACAACA-TCAAGATGTTTGTTCTCGATGAAG 754
Query 575 CTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGATATACGACATCTTCCAGCTTCTTC 634
|||||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 755 CTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTTCTTC 814
Query 635 CTTCCAAGGTTC-AGGTCGGTGTTTTCTCTGCTACAATGCCACCCGAAGCCCTTGAGATC 693
| |||| | || | || ||||| ||||| || ||||||||||| ||||| |||||||||
Sbjct 815 CA-CCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATC 873
Query 694 ACAAGGAAGTTTATGAACAAACCAGTCAGGATTCT-GGTCAAGCGAGACGAGCTGACTCT 752
||||||||||| |||| ||| ||||| || || || ||| ||||| || ||||| || ||
Sbjct 874 ACAAGGAAGTTCATGAGCAAGCCAGTGAGAAT-CTTGGTGAAGCGTGATGAGCTTACCCT 932
Query 753 GGAAGGTATTAAGCAGTTTTATGTCAATGTAGACAAGGAAGAGTGGAAACTCGAGACACT 812
|||||||| |||||||| || ||||| || || || ||||||||||| |||||||||||
Sbjct 933 TGAAGGTATCAAGCAGTTCTACGTCAACGTTGAGAAAGAAGAGTGGAAGCTCGAGACACT 992
Query 813 ATGTGATCTCTACGAGACACTGGCCATCACGCAAAGTGTCATCTTTGTGAACACAAGGCG 872
||||||||||||||||| || |||||||| || ||||||||||| |||||||| |||||
Sbjct 993 CTGTGATCTCTACGAGACTCTTGCCATCACTCAGAGTGTCATCTTCGTGAACACCAGGCG 1052
Query 873 TAAGGTTGATTGGCTAACCGACAAAATGAGAAGCCGTGACCACACTGTCTCAGCCACACA 932
||||||||||||||| || |||||||||||||||||||||||||| ||||| || || ||
Sbjct 1053 TAAGGTTGATTGGCTCACAGACAAAATGAGAAGCCGTGACCACACAGTCTCTGCAACTCA 1112
Query 933 CGGAGACATGGACCAGAACACAAGAGACATCATCATGCGCGAATTCCGCTCTGGATCTTC 992
||||||||||||||||||||| || |||||||||||| | || ||| | ||||| || ||
Sbjct 1113 CGGAGACATGGACCAGAACACCAGGGACATCATCATGAGAGAGTTCAGGTCTGGTTCCTC 1172
Query 993 CCGCGTCCTCATAACCACTGACCTTCTT-GCTCGTGGTATTGATGTTCAGCAAGTCTCTC 1051
||| || ||||| ||||||||||| ||| ||||||||||||||||| || |||||||| |
Sbjct 1173 CCGTGTTCTCATCACCACTGACCT-CTTAGCTCGTGGTATTGATGTCCAACAAGTCTCCC 1231
Query 1052 TTGTCATAAACTTTGACCTCCCAACCCAACCGGAGAATTACCTTCACCGTATTGGAAGAA 1111
| || || ||||| || |||||||| || || ||||| |||||||||||||| |||||||
Sbjct 1232 TGGTTATCAACTTCGATCTCCCAACTCAGCCAGAGAACTACCTTCACCGTATCGGAAGAA 1291
Query 1112 GTGGAAGGTTTGGAAGAAAGGGAGTGGCAATCAATTTCATGACAACG-GAGGATGAGAGA 1170
|||||||||| || |||||||| || || ||||||||| |||| || || ||||||||
Sbjct 1292 GTGGAAGGTTCGGGAGAAAGGGTGTTGCGATCAATTTCGTGACC-CGTGATGATGAGAGG 1350
Query 1171 ATG 1173
|||
Sbjct 1351 ATG 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5