BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908890 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 195 6e-49 > AT1G72800.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:27397216-27398500 FORWARD LENGTH=1285 Length=1285 Score = 195 bits (105), Expect = 6e-49 Identities = 126/136 (93%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 474 GAATGGAGCAGAAAAGGCGTTGGAACTTGGTACACATGTCGTGGGAGGATGGAATCTTGT 533 ||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 912 GAA-GGAGCAGAGAAGGCGTTGGAACTTGGTAGACATGACGTGGGAGGATGGGATCTTGT 970 Query 534 AGTTGGTAAGGCTGAACCGATACGCAGTGGAAGTACTTGGCCTTTTCCCGGCCGCTGTGG 593 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 971 AGTTGGTAAGGCTGAACCGATTCGCAGTGGAAGTACTTGGCCTTTTCCTGGCCGTTGTGG 1030 Query 594 CAATCAAGGCCGTTGT 609 ||||| ||||||||| Sbjct 1031 TAATCAGGGCCGTTGT 1046 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5