BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908890

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72800.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   195    6e-49


> AT1G72800.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr1:27397216-27398500 FORWARD LENGTH=1285
Length=1285

 Score =  195 bits (105),  Expect = 6e-49
 Identities = 126/136 (93%), Gaps = 1/136 (1%)
 Strand=Plus/Plus

Query  474   GAATGGAGCAGAAAAGGCGTTGGAACTTGGTACACATGTCGTGGGAGGATGGAATCTTGT  533
             ||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct  912   GAA-GGAGCAGAGAAGGCGTTGGAACTTGGTAGACATGACGTGGGAGGATGGGATCTTGT  970

Query  534   AGTTGGTAAGGCTGAACCGATACGCAGTGGAAGTACTTGGCCTTTTCCCGGCCGCTGTGG  593
             ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct  971   AGTTGGTAAGGCTGAACCGATTCGCAGTGGAAGTACTTGGCCTTTTCCTGGCCGTTGTGG  1030

Query  594   CAATCAAGGCCGTTGT  609
              ||||| |||||||||
Sbjct  1031  TAATCAGGGCCGTTGT  1046



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5