BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908894
Length=2781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17600.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 283 6e-75
AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 159 1e-37
AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460 FO... 152 2e-35
AT4G09360.1 | Symbols: | NB-ARC domain-containing disease resi... 84.2 6e-15
> AT1G17600.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:6052936-6056664 REVERSE LENGTH=3332
Length=3332
Score = 283 bits (153), Expect = 6e-75
Identities = 431/560 (77%), Gaps = 39/560 (7%)
Strand=Plus/Plus
Query 626 AGGTTCTCTTTATAGGAATATGGGGTATGGGAGGCATAGGCAAAACCACCATTGCCAATT 685
|||||||| | ||||||| ||||| |||||||| || || |||||| |||||| || |
Sbjct 703 AGGTTCTCCTGGTAGGAATCTGGGGAATGGGAGGAATTGGGAAAACCTCCATTGTTAAGT 762
Query 686 GTCTATATGACCGA-TTTTCAAGTCAA-TTCTCAGCTCGTTATTTCATTGAAGACATTAA 743
|||| ||||||| | | ||| | || ||| |||||| || |||||| ||| |||||||
Sbjct 763 GTCTCTATGACC-AGCTCTCACCTAAATTTC-CAGCTCATTGTTTCATAGAAAACATTAA 820
Query 744 GAATATTTGTAAGGACAAGAGTCC-TG--CGT--A-C--TTACAGGAAAG-ATTCCTCTC 794
|| | || |||| ||||| | || || | | | | || || |||| ||| |||||
Sbjct 821 GAGTGTTAGTAAAGACAA-TGGCCATGATC-TAAAGCATTTGCA-AAAAGAATTGCTCTC 877
Query 795 CAGAAT-TTGTGGTGGTTTAGATATT-GGTTTTCGAAGCCAT-GAAGCAAGATCG-CAGG 850
||| || | | || | | |||||| |||| | | || | | ||||| ||| | || |
Sbjct 878 CAGTATCCTCT-GT-G-AT-GATATTAGGTTAT-GGAG-CGTGGAAGCTGGAT-GCCAAG 930
Query 851 AGATAATCGCA-AGACTCGGGCACCAAAAAATACTTATTGTGCTTGATGGTGTGGATAAA 909
|||||| | ||||| ||| | ||||| | || |||||||||||||||||||||||
Sbjct 931 AGATAA-AAAAGAGACTTGGGAATCAAAAGGTTTTTCTTGTGCTTGATGGTGTGGATAAA 989
Query 910 GTGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCTGGTTTGGTCCAGGGAGCCGAATC 969
|||| |||| | ||||| ||||||||||| | | |||||||||||| |||||||||||
Sbjct 990 GTGGCGCAGGTGCATGCTTTGGCAAAAGAGAAAAACTGGTTTGGTCCTGGGAGCCGAATT 1049
Query 970 ATCATAACCACACGAGACAGGGGCCTGCTCAATTCCTGTGGAGTAAACAAT-GTATATGA 1028
||||||||||| ||||| | |||| |||||||| ||||||||||| | | | || |||||
Sbjct 1050 ATCATAACCACTCGAGATATGGGCTTGCTCAATACCTGTGGAGTAGA-AGTCGTTTATGA 1108
Query 1029 GGTTAAGTGCTTGGATGATAAGGATGCCCTCCAGGTATTTAAA-AT-TTCAGCTTT-GAG 1085
|||||||||||||||||||||||||||||||||| | |||||| | || ||||| ||
Sbjct 1109 GGTTAAGTGCTTGGATGATAAGGATGCCCTCCAGATGTTTAAACAGATT--GCTTTTGA- 1165
Query 1086 AGGAAGCCCGCCACCTTCAGATGGATTTGAGCAACTCTTCA-TCAGAGCTTCTCGGCTGG 1144
|||| | | || |||| || || ||||| ||||||| || || |||||||| ||| |
Sbjct 1166 AGGAGGACTTCCTCCTTGTGAGGGTTTTGACCAACTCT-CAATCCGAGCTTCTAAGCTTG 1224
Query 1145 CACACGGTCTTCCCTCTGCC 1164
| ||||| ||||| ||||||
Sbjct 1225 CTCACGGGCTTCCTTCTGCC 1244
> AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:19773277-19777242 REVERSE LENGTH=3573
Length=3573
Score = 159 bits (86), Expect = 1e-37
Identities = 136/159 (86%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 887 TTGTGCTTGATGGTGTGGATAAAGTGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCT 946
|||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||
Sbjct 881 TTGTGCTTGATGGTGTTGATAAAGTGGAGCAGTTACATGCCTTGGCAAAGGAGGCTAGCT 940
Query 947 GGTTTGGTCCAGGGAGCCGAATCATCATAACCACACGAGACAGGGGCCTGCTCA-ATTCC 1005
||||||||||||||||||||||||| ||||||||||| ||||| | |||| | |||||
Sbjct 941 GGTTTGGTCCAGGGAGCCGAATCATTATAACCACACGTGACAGAAGATTGCT-AGATTCC 999
Query 1006 TGTGGAGT-A--AACAATGTATATGAGGTTAAGTGCTTG 1041
|| |||| | ||||| ||| |||||||| ||||||
Sbjct 1000 TGCAGAGTGACCAACAA-GTAC--GAGGTTAAATGCTTG 1035
> AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460
FORWARD LENGTH=2060
Length=2060
Score = 152 bits (82), Expect = 2e-35
Identities = 96/103 (93%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 887 TTGTGCTTGATGGTGTGGATAAAGTGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCT 946
|||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||
Sbjct 1885 TTGTGCTTGATGGTGTTGATAAAGTGGAGCAGTTACATGCCTTGGCAAAGGAGGCTAGCT 1826
Query 947 GGTTTGGTCCAGGGAGCCGAATCATCATAACCACACGAGACAG 989
||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1825 GGTTTGGTCCAGGGAGCCGAATCATTATAACCACACGTGACAG 1783
> AT4G09360.1 | Symbols: | NB-ARC domain-containing disease resistance
protein | chr4:5940186-5943280 FORWARD LENGTH=2562
Length=2562
Score = 84.2 bits (45), Expect = 6e-15
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 615 ATCTGAAAACCAGGTTCTCT-TTATAGGAATATGGGGTATGGGAGGCATAGGCAAAACCA 673
|||||| || |||||| | | || ||||| ||||| ||||||||||||||||||||||
Sbjct 45 ATCTGAGAATGAGGTTC-GTATGATCGGAATCTGGGGAATGGGAGGCATAGGCAAAACCA 103
Query 674 CCATTGCCAATTGTCTATATGA 695
|||||||||| ||||| |||||
Sbjct 104 CCATTGCCAAGTGTCTCTATGA 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138159761022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5