BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908894 Length=2781 Score E Sequences producing significant alignments: (Bits) Value AT1G17600.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 283 6e-75 AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 159 1e-37 AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460 FO... 152 2e-35 AT4G09360.1 | Symbols: | NB-ARC domain-containing disease resi... 84.2 6e-15 > AT1G17600.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr1:6052936-6056664 REVERSE LENGTH=3332 Length=3332 Score = 283 bits (153), Expect = 6e-75 Identities = 431/560 (77%), Gaps = 39/560 (7%) Strand=Plus/Plus Query 626 AGGTTCTCTTTATAGGAATATGGGGTATGGGAGGCATAGGCAAAACCACCATTGCCAATT 685 |||||||| | ||||||| ||||| |||||||| || || |||||| |||||| || | Sbjct 703 AGGTTCTCCTGGTAGGAATCTGGGGAATGGGAGGAATTGGGAAAACCTCCATTGTTAAGT 762 Query 686 GTCTATATGACCGA-TTTTCAAGTCAA-TTCTCAGCTCGTTATTTCATTGAAGACATTAA 743 |||| ||||||| | | ||| | || ||| |||||| || |||||| ||| ||||||| Sbjct 763 GTCTCTATGACC-AGCTCTCACCTAAATTTC-CAGCTCATTGTTTCATAGAAAACATTAA 820 Query 744 GAATATTTGTAAGGACAAGAGTCC-TG--CGT--A-C--TTACAGGAAAG-ATTCCTCTC 794 || | || |||| ||||| | || || | | | | || || |||| ||| ||||| Sbjct 821 GAGTGTTAGTAAAGACAA-TGGCCATGATC-TAAAGCATTTGCA-AAAAGAATTGCTCTC 877 Query 795 CAGAAT-TTGTGGTGGTTTAGATATT-GGTTTTCGAAGCCAT-GAAGCAAGATCG-CAGG 850 ||| || | | || | | |||||| |||| | | || | | ||||| ||| | || | Sbjct 878 CAGTATCCTCT-GT-G-AT-GATATTAGGTTAT-GGAG-CGTGGAAGCTGGAT-GCCAAG 930 Query 851 AGATAATCGCA-AGACTCGGGCACCAAAAAATACTTATTGTGCTTGATGGTGTGGATAAA 909 |||||| | ||||| ||| | ||||| | || ||||||||||||||||||||||| Sbjct 931 AGATAA-AAAAGAGACTTGGGAATCAAAAGGTTTTTCTTGTGCTTGATGGTGTGGATAAA 989 Query 910 GTGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCTGGTTTGGTCCAGGGAGCCGAATC 969 |||| |||| | ||||| ||||||||||| | | |||||||||||| ||||||||||| Sbjct 990 GTGGCGCAGGTGCATGCTTTGGCAAAAGAGAAAAACTGGTTTGGTCCTGGGAGCCGAATT 1049 Query 970 ATCATAACCACACGAGACAGGGGCCTGCTCAATTCCTGTGGAGTAAACAAT-GTATATGA 1028 ||||||||||| ||||| | |||| |||||||| ||||||||||| | | | || ||||| Sbjct 1050 ATCATAACCACTCGAGATATGGGCTTGCTCAATACCTGTGGAGTAGA-AGTCGTTTATGA 1108 Query 1029 GGTTAAGTGCTTGGATGATAAGGATGCCCTCCAGGTATTTAAA-AT-TTCAGCTTT-GAG 1085 |||||||||||||||||||||||||||||||||| | |||||| | || ||||| || Sbjct 1109 GGTTAAGTGCTTGGATGATAAGGATGCCCTCCAGATGTTTAAACAGATT--GCTTTTGA- 1165 Query 1086 AGGAAGCCCGCCACCTTCAGATGGATTTGAGCAACTCTTCA-TCAGAGCTTCTCGGCTGG 1144 |||| | | || |||| || || ||||| ||||||| || || |||||||| ||| | Sbjct 1166 AGGAGGACTTCCTCCTTGTGAGGGTTTTGACCAACTCT-CAATCCGAGCTTCTAAGCTTG 1224 Query 1145 CACACGGTCTTCCCTCTGCC 1164 | ||||| ||||| |||||| Sbjct 1225 CTCACGGGCTTCCTTCTGCC 1244 > AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:19773277-19777242 REVERSE LENGTH=3573 Length=3573 Score = 159 bits (86), Expect = 1e-37 Identities = 136/159 (86%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 887 TTGTGCTTGATGGTGTGGATAAAGTGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCT 946 |||||||||||||||| |||||||||||||||||||||||||||||||| || | |||| Sbjct 881 TTGTGCTTGATGGTGTTGATAAAGTGGAGCAGTTACATGCCTTGGCAAAGGAGGCTAGCT 940 Query 947 GGTTTGGTCCAGGGAGCCGAATCATCATAACCACACGAGACAGGGGCCTGCTCA-ATTCC 1005 ||||||||||||||||||||||||| ||||||||||| ||||| | |||| | ||||| Sbjct 941 GGTTTGGTCCAGGGAGCCGAATCATTATAACCACACGTGACAGAAGATTGCT-AGATTCC 999 Query 1006 TGTGGAGT-A--AACAATGTATATGAGGTTAAGTGCTTG 1041 || |||| | ||||| ||| |||||||| |||||| Sbjct 1000 TGCAGAGTGACCAACAA-GTAC--GAGGTTAAATGCTTG 1035 > AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460 FORWARD LENGTH=2060 Length=2060 Score = 152 bits (82), Expect = 2e-35 Identities = 96/103 (93%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 887 TTGTGCTTGATGGTGTGGATAAAGTGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCT 946 |||||||||||||||| |||||||||||||||||||||||||||||||| || | |||| Sbjct 1885 TTGTGCTTGATGGTGTTGATAAAGTGGAGCAGTTACATGCCTTGGCAAAGGAGGCTAGCT 1826 Query 947 GGTTTGGTCCAGGGAGCCGAATCATCATAACCACACGAGACAG 989 ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1825 GGTTTGGTCCAGGGAGCCGAATCATTATAACCACACGTGACAG 1783 > AT4G09360.1 | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:5940186-5943280 FORWARD LENGTH=2562 Length=2562 Score = 84.2 bits (45), Expect = 6e-15 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 615 ATCTGAAAACCAGGTTCTCT-TTATAGGAATATGGGGTATGGGAGGCATAGGCAAAACCA 673 |||||| || |||||| | | || ||||| ||||| |||||||||||||||||||||| Sbjct 45 ATCTGAGAATGAGGTTC-GTATGATCGGAATCTGGGGAATGGGAGGCATAGGCAAAACCA 103 Query 674 CCATTGCCAATTGTCTATATGA 695 |||||||||| ||||| ||||| Sbjct 104 CCATTGCCAAGTGTCTCTATGA 125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 138159761022 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5