BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908896
Length=3510
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09360.1 | Symbols: | NB-ARC domain-containing disease resi... 867 0.0
AT1G72860.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 220 6e-56
AT1G17600.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 147 1e-33
AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 137 6e-31
AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460 FO... 82.4 3e-14
> AT4G09360.1 | Symbols: | NB-ARC domain-containing disease resistance
protein | chr4:5940186-5943280 FORWARD LENGTH=2562
Length=2562
Score = 867 bits (469), Expect = 0.0
Identities = 647/732 (88%), Gaps = 15/732 (2%)
Strand=Plus/Plus
Query 2095 ATATCAGAAAAGATTGTCC-TCCGAGAACCTGGACTCAGGCGACGGCGGCAAATAATATT 2153
|||||||||||| ||||| ||| ||||| |||||| |||||||| || |||||||||||
Sbjct 1175 ATATCAGAAAAGGCTGTCCTTCC-AGAACGTGGACTAAGGCGACGCCGACAAATAATATT 1233
Query 2154 GAGACTTCCCAGAGCAGTAAAGAAACTAAATTCT-TTGGCAAACCTATCCATAGAGGGGA 2212
||| |||||||||| ||||||||| || | |||| || ||||||||||| ||||| ||||
Sbjct 1234 GAGGCTTCCCAGAGGAGTAAAGAAGCTGAGTTCTCTT-GCAAACCTATCTATAGAAGGGA 1292
Query 2213 AAATAAACATCGGGTTGTGGGATATCATGGGCAA-TGCAGAGCATCTCTCCTTTATTTAC 2271
| ||| ||||||| |||||| || ||| ||| || | |||||| |||||||||| || |
Sbjct 1293 AGATACACATCGGCTTGTGGCATCTCACGGG-AACCGTAGAGCACCTCTCCTTTA-TTCC 1350
Query 2272 GAGCAACAAATTCCTGAGGAATATATGGTAAT--T-CCAAAGGAAAGACTTCCGTTCATC 2328
|||||| |||| ||||| | | || ||||||| | |||||| ||||| ||||| |||||
Sbjct 1351 GAGCAAAAAATCCCTGATG-A-AT-TGGTAATGGTGCCAAAGAAAAGATTTCCGATCATC 1407
Query 2329 TCAAGCTTCTATGATTTTAAATCGCTGAGTATCAAGCGAG-TTAGCTACAGCGCAGATGG 2387
|||||||| |||||| ||||||| || || |||| ||| | ||||| ||| ||||||||
Sbjct 1408 TCAAGCTTTTATGATCTTAAATCTCTCAGCATCATGCG-GTTTAGCCACATTGCAGATGG 1466
Query 2388 TGTCCCCTTCCGTTGCATTAGCTTCTCAGCTTTCCCGTGCTTGGTAGAGTTGAATCTAAT 2447
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1467 TACCCCCTTCCGTTGCATTAGCTTCTCAGGTTTCCAGTGCTTGGTAGAGTTGAATCTGAT 1526
Query 2448 CAACTTAAATATCCAGAAAATCCCAGTCGACATTGGTCTAATGCAGTCACTAGAGAAACT 2507
||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1527 CAACTTAAACATCCAGAAAATCCCAGACAACATTGGTCTAATGCAGTCACTAGAGAAAGT 1586
Query 2508 GGACCTCAGCGGAAATGATTTCAGGAGTTTACCCGCATCAACGAAGAACCTTTCGAAGTT 2567
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 1587 GGACCTCAGCGGAAATGATTTCAGGAATCTACCCGCATCAACAAAGAACCTTTCGAAGTT 1646
Query 2568 GAAATACGTGAGGCTCTTTAATTGCATCAAACTCAAGACATTTCCAGAGTTGACTGAGTT 2627
|||||||| |||||||| |||||||||||||||| || ||||| |||| ||||||||||
Sbjct 1647 GAAATACGCGAGGCTCTCTAATTGCATCAAACTCGAGGCATTTGTAGAGCTGACTGAGTT 1706
Query 2628 GCAGACGCTCAAGCTTTCCGGCTGTTCCAACCTCGAATCACTGCTGGAACTTCCTTGTGC 2687
|||||||||||||||||| || ||| | ||||||||||| |||||||||||||||| |||
Sbjct 1707 GCAGACGCTCAAGCTTTCTGGTTGTACGAACCTCGAATCTCTGCTGGAACTTCCTTATGC 1766
Query 2688 AGTTCAAGATGAAGGCAGATTCTGTTTGCTAGAGCTTGAGCTTGATAACTGCAAGAATCT 2747
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1767 GGTTCAAGATGTAGGCAGATTCTGTTTGCTAGCGCTTGAGCTTGATAACTGCAAGAATCT 1826
Query 2748 CCAAGCATTGTCAGAACAGCTTAGCCGTTTCACCAATTTAATACACTTGGACCTAAGCAG 2807
||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 1827 CCAAGCATTATCAGAACAGCTAAGCCATTTCAGCAATTTAATACACTTGGACCTAAGCAG 1886
Query 2808 CCACGACTTTGA 2819
||||||||||||
Sbjct 1887 CCACGACTTTGA 1898
Score = 828 bits (448), Expect = 0.0
Identities = 563/618 (91%), Gaps = 9/618 (1%)
Strand=Plus/Plus
Query 2882 AGAAACTCAAATCAGTGGAAGAGCTTCCAC-AAAGCCTCAAGCATCTCTACGCACACGGC 2940
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1898 AGAAACTCAAATCAGTGGAAGAGCTTCCACTAAA-CCTCAAGCATCTCTACGCACACGGC 1956
Query 2941 TGCGATTCCCTGGAAAATGTATCCCTTTCCCCAAATCATTCAATCAAACACCTCGATCTT 3000
|| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1957 TGTGATTCCCTGGAAAGTGTCGACCTTTCCCCAAAGCATTCAATCAAACACCTCGATCTT 2016
Query 3001 AGCCATTGCTTCGGTTTGCAACAAGATGAGCAACTGCTTACACGGTTTCTAAACGACAAA 3060
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 2017 AGCCATTGCTTCGGTTTGCAACAAGATGAGCAACAGATTACACAATTTCTAAACGACAAG 2076
Query 3061 TGTAGCCAAGAGGTTTCACAACGATTTCTTTGCTTACCCGGAAATGAAGTGCCCAGAAAT 3120
||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||
Sbjct 2077 TGTAGCCAAGAGGTTTCACAAAGATTTCTTTGCTTACCAGGAACTGAAGTACCCAGAAAT 2136
Query 3121 TTCGATAATCAATCCCATGGAACATCTACGAAGATCAGCCTGTTTACACCGACCCTTCTG 3180
||||||||||| || ||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 2137 TTCGATAATCAGTCACATGGGACATCGACGAAGATCAGCTTGTTTACACCGACACTTCTG 2196
Query 3181 GGTTTTGCTGCTTGTATCTTGATTTCTTGTGAGAGGTCCTTCAATCTCCAATTCCCAGCG 3240
|||| ||||| ||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 2197 AGTTTCGCTGCCTGTATCTTGATTTCTTGCGAGAGGTCCTTCTACCTCCAATTCCCAGCG 2256
Query 3241 TTTAGTTATGACTGGAACAGCGAAGCTGATGAAGTAATTTGGATTAACCTCAAACCAAAT 3300
||||||||||| |||||| || ||| |||||||||||||| ||||||||||| |||||||
Sbjct 2257 TTTAGTTATGATTGGAACCGCAAAGATGATGAAGTAATTTCGATTAACCTCACACCAAAT 2316
Query 3301 CTCAATCATTCATCGGAAATTGAGGAAGAAGAAACTGTAACATCACATCACCTGGTTATC 3360
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2317 CTCAATCTTTCATCGGAGATTGAGGAAGAAGAGACTGTAACATCACATCACCTGGTTATC 2376
Query 3361 ATCCACGT-CCCGAGTAGCTTAAACACCGAGAAAATCGAAGAGTTGCGACTCGAATCC-C 3418
|||||||| ||| |||||| |||||||||| ||||||||||| ||||||||||||||| |
Sbjct 2377 ATCCACGTACCC-AGTAGCATAAACACCGACAAAATCGAAGATTTGCGACTCGAATCCTC 2435
Query 3419 ATCTTCAACTTCCAGAGGAGGAGTTTCAGTTTCCACTAGGCGAGATAAGAGCTTGTGGAA 3478
||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 2436 -TCTTCAATTTCCAGAGGAG---TTTCAGTTTTCACCCTGCGAGATAAGAGCTTGTGGAA 2491
Query 3479 TTCGCATTATTGACGAAG 3496
||||||| |||||||||
Sbjct 2492 TTCGCATGGTTGACGAAG 2509
Score = 743 bits (402), Expect = 0.0
Identities = 537/602 (89%), Gaps = 10/602 (2%)
Strand=Plus/Plus
Query 595 GTTCACATGGAACGACTGAATCCTCTATTGAGTATTGAATCGGAGGATGAGGTTCGTATG 654
||| |||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||
Sbjct 7 GTTGACATGGAACGACTGAATCCTCTATTGAGCATCGAATCTGAGAATGAGGTTCGTATG 66
Query 655 ATAGGAATCTGGGGAATGGGAGGCATCGGGAAAACCACCATAGCCAAGTGTCTCTATGAA 714
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 67 ATCGGAATCTGGGGAATGGGAGGCATAGGCAAAACCACCATTGCCAAGTGTCTCTATGAA 126
Query 715 AAATATTCACGTCGATTTGCTCATTACTGTTTCATAGAAAACGTTAGGATTGCTGCAAAG 774
||||||| || ||||||| ||| || |||||||||||||||||||||||| |||||||
Sbjct 127 GAATATTCGCGCCGATTTGTTCACTATTGTTTCATAGAAAACGTTAGGATTTTTGCAAAG 186
Query 775 AATGGCCTCCCGTATTTGCAGAAAAAGCTCCTTTC-CAATATCAGAGG-AAAGAAACAAG 832
||||||||||| ||||||||| ||||||| || || || ||| |||| ||| || ||||
Sbjct 187 AATGGCCTCCCATATTTGCAGGAAAAGCTTCTATCTGAA-ATCCGAGGCAAA-AAGCAAG 244
Query 833 AGACCCTATGGTGCGTGGAGAAAGGATGCAG-TTGTATCAAGTCAAAGCTTAAGGATAAA 891
||||| ||||| |||||||||| |||||||| | ||||||||| ||||| ||||| |||
Sbjct 245 AGACCTTATGGAGCGTGGAGAAGGGATGCAGACT-TATCAAGTCGAAGCTCAAGGAAAAA 303
Query 892 ATTTTCCTTGTCCTTGATGATGTGGACGACGTGGACCAGCTGCATGCCCTGGCAAAAAAT 951
| ||||||||||||||| ||||||||| | |||||||||||||||||||| |||||| |
Sbjct 304 AATTTCCTTGTCCTTGACGATGTGGACAATGTGGACCAGCTGCATGCCCTAGCAAAAGAG 363
Query 952 ACTG-GCTGGTTTGGACCAGGGAGCCGAATCATCATAACTACACGAGACTTTGGCTTGCT 1010
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 364 AC-GAGCTGGTTTGGACCAGGGAGCCGAATCATCATAACTACACGAGACTTTGGCTTACT 422
Query 1011 CTACTCCTTTGGAGTGAGATTATTATACCATGTCAGCTTTTTGGAC-ATCGGTGATGCTA 1069
||||||||||||||||||||||||||||| ||| ||||||||||| | | ||||||||
Sbjct 423 CTACTCCTTTGGAGTGAGATTATTATACCGTGTTAGCTTTTTGGATGA-CAATGATGCTA 481
Query 1070 TCCAGGTCTTTAAACAGGTTGCTTTTGAAGGAGGGCAAGCTCCTTCTGATGTCTACCAGC 1129
|| | ||||||||||| ||||||||||| ||||||||| |||||| |||||||||||| |
Sbjct 482 TCAAAGTCTTTAAACATGTTGCTTTTGACGGAGGGCAACCTCCTTTTGATGTCTACCATC 541
Query 1130 AATTCTCAATCCGTGCTTCTAGGCTCGCTCAAGGCCTTCCTTCAGCCCTCGAAGCTTTTG 1189
|||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 542 AATTCTCAGTCCGTGCTTCTAGGCTTGCTCAAGGCCTTCCTTCAGCCCTTGAGGCTTTTG 601
Query 1190 GC 1191
||
Sbjct 602 GC 603
Score = 335 bits (181), Expect = 2e-90
Identities = 238/265 (90%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 1237 TTGGGTATTCTTGAAACAGTTCCCCACCAAA-GTATCATGGATATTTTGAAAACTAGCTA 1295
||||| ||||||||||||||||| || ||| |||||| ||||||||| |||||||||||
Sbjct 607 TTGGGCATTCTTGAAACAGTTCCTCA-AAAACGTATCAAGGATATTTTAAAAACTAGCTA 665
Query 1296 TGACGGTTTAGATGAGCAAGAACAGGCTGCGTTCCTTCACGTTGCATGCCTCTTCAATGG 1355
|||||||||||| ||| |||| || |||||||||||||| |||||||| || ||||||||
Sbjct 666 TGACGGTTTAGACGAGGAAGAGCAAGCTGCGTTCCTTCATGTTGCATGTCTATTCAATGG 725
Query 1356 A-ACCTCTGTCCAGCGTGTAAATGCCCTTATCGATGATGGTGACATAAGGACAAAAGCTT 1414
| | ||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 726 AGA-CTCTGTCCACCGGGTAAATGCCCTTATCGATGATGGTGACATGAGGATAAAAGCTT 784
Query 1415 TAGAAGCGAAGTCTCTCATAGAAATATCACCTGATGGATGCATCACCAT-GCATGTCTTG 1473
|||||| ||||||||||||||| ||||||| |||||||||||| || || ||||||||||
Sbjct 785 TAGAAGTGAAGTCTCTCATAGACATATCACTTGATGGATGCATTAC-ATTGCATGTCTTG 843
Query 1474 ATAGAACAAGCAGCAAGAGAAATTG 1498
||||||||||| |||||||||||||
Sbjct 844 ATAGAACAAGCGGCAAGAGAAATTG 868
> AT1G72860.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:27416228-27420778 REVERSE LENGTH=4360
Length=4360
Score = 220 bits (119), Expect = 6e-56
Identities = 230/282 (82%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 439 TGGAGAGAAGCTCTCAGGGAGGTCG-CAGGAACATCAGGCAAA-GA-TTTGAGTACTTGT 495
|||||||||||||||| || ||| || | | |||| ||| || ||||| ||||||
Sbjct 409 TGGAGAGAAGCTCTCACCCAGATCGCCA-GTTTAGCAGG-AAAGGATTTTGA-AACTTGT 465
Query 496 -AAGGACGAGGCCACGATGGTTGCCGATATTGTT-GGGCAAATTTCAAAACAAG-TGTT- 551
|| |||||||| ||||| ||| || |||||| | | ||||||||| ||| ||||
Sbjct 466 GAA-GACGAGGCGTCGATGATTGAAGAGATTGTTAAAG-ACATTTCAAAA-AAGTTGTTG 522
Query 552 CTCAATGGAGCCACTAGACTTCAGTGATATTGTAGGGATGAAAGTTCACATGGAACGACT 611
| ||| ||||| |||| ||||| || || ||||||||||| | ||||||||| || ||
Sbjct 523 AT-TATGCAGCCAGTAGATTTCAGCGACATCGTAGGGATGAACGCTCACATGGAGCGCCT 581
Query 612 GAATCCTCTATTGAGTATTGAATCGGAGGATGAGGTTCGTATGATAGGAATCTGGGGAAT 671
|| ||||||||||||||| || || ||| |||||||||||||||||||||||||||||||
Sbjct 582 GAGTCCTCTATTGAGTATGGACTCTGAGAATGAGGTTCGTATGATAGGAATCTGGGGAAT 641
Query 672 GGGAGGCATCGGGAAAACCACCATAGCCAAGTGTCTCTATGA 713
|||||||||||| ||||||||||| ||||||||||||| |||
Sbjct 642 GGGAGGCATCGGCAAAACCACCATTGCCAAGTGTCTCTTTGA 683
> AT1G17600.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:6052936-6056664 REVERSE LENGTH=3332
Length=3332
Score = 147 bits (79), Expect = 1e-33
Identities = 396/544 (73%), Gaps = 42/544 (8%)
Strand=Plus/Plus
Query 2433 AGAGTTGAATCTAATCAACTTAAATATCCA-GAAAATCCCAGTC-GACATTGGTCTA-AT 2489
|||| | || ||| | |||||||| || || |||||||||| || | ||| ||| | |
Sbjct 2489 AGAGCTAAAACTAGTGAACTTAAACAT-CAGGAAAATCCCA-TCTGGGATTTGTC-ACCT 2545
Query 2490 GCAGTCACTAGAGAAACTGGACCTCAGCGGAAATGA-TTTCAGGAGTTTACCCGCATCAA 2548
| | | ||||||||| |||||||||||||||||||| ||| | || ||||| | | | |
Sbjct 2546 GGATTTACTAGAGAAGCTGGACCTCAGCGGAAATGATTTTGA-GAACTTACCAGAAGCTA 2604
Query 2549 CGAAG-AACCTTTCGAAGTTGAAATAC-GTGAGGC-TCTTTAATTGCATCAAACT-CAAG 2604
| || | |||||| ||| ||| || | ||| || || ||| | || || || |
Sbjct 2605 TG-AGTAGCCTTTCCCGGTT-AAAAACTCTCTGGCTTC-AAAACTGCTTTAAGCTCCAGG 2661
Query 2605 ACATTTCCAGAGTTGACTGAGTTGCAGACGCTCA-AGCTTTCCGGCTGTTCCAACC-TCG 2662
| || ||| || | ||| || ||||||| || | | ||| || |||| |||| | |
Sbjct 2662 A-GTTGCCAAAGCTAACTCAGGTGCAGACACTTACA-CTTACCAACTGTAGGAACCTTAG 2719
Query 2663 AATCACT-GCTGGAACT-TCCTTGTGC-AGTTCAAGATGAAGGCAGATTCTGTTTGCTAG 2719
|||| | || | |||| | || | || ||||||||| || |||| ||||||||| |
Sbjct 2720 -ATCATTGGC-GAAACTAT-CTAACACAAG-TCAAGATGAGGGAAGATACTGTTTGCTTG 2775
Query 2720 AGC-TTGAGCTTGATAACTGCAAGAATCTCCAAGCATTGTCAGAACAGCTTAGCCGTTTC 2778
||| ||| ||||| || ||||||| | | || |||||||||| |||||||| | ||||
Sbjct 2776 AGCTTTG-CCTTGAAAATTGCAAGAGTGTTGAATCATTGTCAGATCAGCTTAGTCATTTC 2834
Query 2779 ACCAATTTAATACACTTGGACCTAAGCAGCCACGACTTTGACG-CAAT-CCCTGAAAGCA 2836
||||| || | | || || || |||| ||| || ||||| | || | || | |||||
Sbjct 2835 ACCAAGTTGACATGTTTAGATCTCAGCAACCATGATTTTGA-GACATTGCCAT-CAAGCA 2892
Query 2837 TCAAG-GAGCTGT-CATCTTTGGTAACTCTGTGCCTCAATAACTGCAAGAAACTCAAATC 2894
|| || || || | | || |||||||| || |||||||||||||||||||||||||||||
Sbjct 2893 TC-AGAGATCT-TACCTCATTGGTAACACTTTGCCTCAATAACTGCAAGAAACTCAAATC 2950
Query 2895 AGTGGAAGAGCTTCCACAAAG-C-CTC-AAGCATCTCTACGCACACGGCTGCGATTCCCT 2951
|||||| | ||||| | | | ||| || |||| | ||||||||||| ||||| ||
Sbjct 2951 GGTGGAAAAACTTCC-CTT-GTCTCTCCAATT-TCTCGATGCACACGGCTGTGATTCTCT 3007
Query 2952 GGAA 2955
|||
Sbjct 3008 CGAA 3011
> AT5G48770.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:19773277-19777242 REVERSE LENGTH=3573
Length=3573
Score = 137 bits (74), Expect = 6e-31
Identities = 1367/1960 (70%), Gaps = 213/1960 (11%)
Strand=Plus/Plus
Query 1152 GCTCGCTCAAGGCCTTCCTTCAGCCCTCGAAGCTTTTGGCACATATCTCCGCCGGA-TTA 1210
|||||||||||| ||||||| |||||| | |||||| || ||| |||||| ||| |
Sbjct 1134 GCTCGCTCAAGGTCTTCCTTTAGCCCTGGTAGCTTTCGGTTCATTTCTCCG-TGGAGCGA 1192
Query 1211 CCTGGATAGAAGGGTGGGAAAAGGCATTGGGTATTCTTGAAACAGTTCCCCACCA-AAGT 1269
||| ||||| | ||||||| | ||| | | | |||||||||| ||| ||||| || |
Sbjct 1193 CCTCTATAGACGAGTGGGAAGATGCAATAGACACGCTTGAAACAGCTCCTCACCAGAA-T 1251
Query 1270 ATCATGGATATTTTGAA-AACTAGCTATGA-CGGTTTAGATGAGC-AAGA-AC-AGGCTG 1324
|||||||||||||| || || ||||||| | | | | | || | | || || || |
Sbjct 1252 ATCATGGATATTTT-AAGAAGTAGCTAT-ACCAATCT-G--GACCTACGAGACAAGACCA 1306
Query 1325 CGTTCCTTCA-CGTTGCATGCCTCTTCAAT-G-GAACCTCTGTCCAGCGTGTAAATGCCC 1381
||| || | || ||||| || |||||| | ||||| | ||| ||||| | |||
Sbjct 1307 TTTTCATT-AGGGTCGCATGTCTTTTCAATGGAGAACCAGTCTCC--CGTGTTTCTACCC 1363
Query 1382 TTATCGATGATGGTGACATAAGGACAAAAGCTTTAGAAGCGAAGTCTCTCATAGAAATAT 1441
|| || ||| | | | ||||| ||||| ||||| | ||||||||||| | ||||
Sbjct 1364 TTCTCTCTGAAACTAAAAGAAGGATAAAAGGTTTAGCTGAAAAGTCTCTCATCCATATAT 1423
Query 1442 CACCTGATGGATGCA-TCACCATGCATGT-CTTGATAGAACAAGCAGCAAGAGAAATTG- 1498
|| ||||||| | | | ||| ||| | ||||||| ||||| || ||||||||||
Sbjct 1424 CAAAAGATGGATATATTGA-CATACAT-TCCTTGATAAAACAAATGGCTAGAGAAATTGT 1481
Query 1499 TGCGCCAAGAATC-TGGCTCCATGCCTTGGA-GACAAAGAATTTTGTGGAAAACTGATCC 1556
|| ||||||| | | | ||| || | || |||||||||||||||| | || ||
Sbjct 1482 TG-TTGAAGAATCATTG-TACATACC-TCGACAACAAAGAATTTTGTGGGATCCTCAT-- 1536
Query 1557 AATCATCTT-TGTGC-TAC---AAAACAACACAGGTACAACA-ACGACT-GAAGG--TGT 1607
|| || || || || ||| ||| ||| ||||| || | | | || | |||| ||
Sbjct 1537 AA-CA-GTTATG-GCGTACTGGAAAGCAAAACAGGGAC-AGAGA-GAATCCAAGGCATG- 1590
Query 1608 AGCACTACACATGTGTGAGA-TGCTTCAAGC-GTTGTCTATCGA-GGGAAACG-TTCTTA 1663
| ||||||| |||||||| | ||| | ||| | || || || ||| | | || ||
Sbjct 1591 A-CACTACATATGTGTGA-ATTGCCCCGAGCAG-CATCCATAGATGGG-AGTGCTT-TTG 1645
Query 1664 ACGC-GAT-CAACAATCTCA-AATTCTTCAAAGCCTTCATGCATTTGAATGACAAAGAGT 1720
| || ||| || ||||||| | ||| ||||| ||||| || || ||||| | |||||
Sbjct 1646 A-GCAGATGGAA-AATCTCATATTTC-TCAAATTCTTCAAACACTTAAATGATAGAGAGT 1702
Query 1721 CCAAACTGAAGT-TC-CTTCCAGGCA-CAGATAT-G--CTTCCCAACACA--CTCAAGTT 1772
|||| ||||| | || ||| | | | | | ||| | ||| || || || || | | |
Sbjct 1703 CCAAGCTGAA-TATCAATTCAAAGAATC-G-TATGGTACTT-CC-ACGCAGCCTTAGGCT 1757
Query 1773 ACTACATTGGGATTCCTATCCTA-TGACAACTTTGCCTCCTGGATACTATCCGC--A-TT 1828
| | |||||||| | ||||| | | ||||| |||| ||| | | | ||| | | |
Sbjct 1758 ATTGCATTGGGACGCATATCC-ATTAACAACCTTGCTTCC--CACA-TTTCCTCTGAGTC 1813
Query 1829 GTCTGGTTGAAC-TCAATTTGCGTTACAGCAGTCTTGTGCATCTATGGGATGGAACCCTG 1887
|||| ||||||| || || |||||||||||| ||| | | | || |||||||||| |
Sbjct 1814 GTCTTGTTGAACTTC-ATCTGCGTTACAGCAATCTGGAGAACCTGTGGGATGGAAAAAT- 1871
Query 1888 GAC-CTCGGT-CAGTTGAA-GA-GACTAGATGTTACTGGCTCAAAGAATCTGACCGAGA- 1942
| | ||| | |||| || || | |||||||| ||||| || |||||||||||| | |
Sbjct 1872 GTCGCTC-TTGGAGTT-AAGGATG-CTAGATGTCACTGGATCTAAGAATCTGACC-AAAC 1927
Query 1943 TTCCAGATCTTTCAAGGGCCACACTGC-TGAAGGA-TTTAATAATGAAAGGCTGTACAAG 2000
||||||||||||||||||| ||| || || |||| | | | | ||||| || || ||
Sbjct 1928 TTCCAGATCTTTCAAGGGCAACAAAGCTTG-AGGAGCTGATTGCT-AAAGGTTGCACGAG 1985
Query 2001 ACTGAAGCAAACT-CCAGAGTCCATTGGAAGCTTATCTTGC-CTGCGGAAACTCGATTTA 2058
|| |||||| | || || | ||||| |||||| ||| | ||| |||||| ||| ||
Sbjct 1986 GTTGGAGCAAA-TCCCGGAAACAATTGGTAGCTTACCTT-CACTGAAGAAACTTGATGTA 2043
Query 2059 TCCAATTGTGAT-GGCTTAACGAATCTTCAGATTCA-TATATCAGAAAAGATTGTCCTCC 2116
||| | |||||| | || | | |||||||||| | | |||| |||| | || ||| |
Sbjct 2044 TCCCACTGTGATCGCCTCATC-AATCTTCAGA-TGATTATAGGAGAATTGCCTGCCCTTC 2101
Query 2117 GAGAACCTGGACTCA-GGCGACGGCGGCAAATAAT-ATTGAGACTTCCCAGA-GCAGTAA 2173
| ||| | | | || ||| |||| || | |||||| |||||||| || |||
Sbjct 2102 AAAAACGTAG-CCCAGGGCTTTTTCGGC-AAGCTTCATTGAG-TTTCCCAGATGCTGTAG 2158
Query 2174 AGAAACTAAATTCT-TTGGCAAACCTATCCATAGAGGGGAAAATAAACATCGGGTTGTGG 2232
| ||| || ||| || | | ||| |||| | || ||| |||| | ||||||
Sbjct 2159 TTACACTGAACTCTCTT-ACGAGTCTAGCCATCCATGGCAAATTAAATTTTTGGTTGTCA 2217
Query 2233 GATATCATG-GGCAATGCAGAGCATCTCTCCTTTATTTACGAGCAACAAATTCCTGAGGA 2291
|| || | || || ||||| || |||| ||||| || ||||||| | ||| | |
Sbjct 2218 CATCTC-CGAGGAAAGGCAGACCACCTCTGCTTTAGTTCCGAGCAATGGACCCCTAACAA 2276
Query 2292 ATATATG--GTAATTCCAAAGGAAAGACTTCCGTTCATCTC-AAGCTTCTA-TGATTTTA 2347
|| | || | || | |||| | | | | | | |||| || || || || || ||||
Sbjct 2277 ATTTCTGAAGCAAGTACAAAAG-ACG-CCTAAGCTCATGTCTGAG-TTTTACGGA-TTTA 2332
Query 2348 AATCGCT-GAGTATCAAGCGAGTT-AGCTACAGCGCAGATGGTGTCC-CCTTCC-GTTGC 2403
|||| || || |||| || |||| | |||| | ||| ||| || | |||| | ||
Sbjct 2333 AATCACTCGA-CATCATGC-AGTTCATCTACCGTAAAGACAGTG-CCTCTTTCCAG-TG- 2387
Query 2404 AT-TAGCTTCTCAGCTTTCC-CGTGCTTGGTAGAGTTGAATCTAATCAACTTAAATATCC 2461
| |||||| |||| ||||| | || || ||||| ||||| || ||| |||| ||
Sbjct 2388 TTATAGCTTTTCAGATTTCCTC-TGGTTAACCGAGTTAAATCTCATAAACCTAAACAT-- 2444
Query 2462 AGAAA--ATCCCAG-TCGACATTGGTCTAATGCA-GTCACTAGAGAAACTGGACCTCAGC 2517
||||| ||||||| | |||||||| || |||| ||| ||| | |||||||||||||||
Sbjct 2445 AGAAAGCATCCCAGAT-GACATTGGCCTTTTGCAGGTC-CTACAAAAACTGGACCTCAGC 2502
Query 2518 GGAAATGATTTCAGGA-GTTTACCCGCATCA-ACG-AAGAACCTTTCGAAGT-TGAAATA 2573
||||||||||||| | | ||||| || | | | || || ||||| | || ||||||
Sbjct 2503 GGAAATGATTTCAC-ATGCCTACCCACAG-ATATGGAA-AATCTTTCTA-GTATGAAATC 2558
Query 2574 -CGTGAGGCTCTTT-AATTGCATCAAACT-CAAGACATTTCCAGAGTTGAC-TGAGTTGC 2629
| | ||||| || || ||| ||||||| ||| ||| | ||| | | || | | ||
Sbjct 2559 TC-TCAGGCT-TTGCAACTGCCTCAAACTTCAA-ACACTACCAAAACT-ACCTCAACTGG 2614
Query 2630 AGACGCTCAAGCTTTCCGGCTGT-TCCAACCTCGAA--TC-ACTGCTGGA-ACTTCCTTG 2684
|||| ||||| ||||| |||| | | | || || || ||| ||| | |||
Sbjct 2615 AGACACTCAAACTTTCTAACTGTATACTTC-TCCAAAGTCCACTA--GGACA-TTCAGC- 2669
Query 2685 TGC-AGTTCAAGATGAAG-GCAGATTCTGTTT-GCTAGAGCTT-GAGCTTGATAACTGCA 2740
||| || ||||||| | | ||| | | || ||| |||||| | |||||| |||||||
Sbjct 2670 TGCCAGAA-AAGATGA-GCGTGGATACCGCTTAGCT-GAGCTTTG-GCTTGACAACTGCA 2725
Query 2741 A-GAATCTCCAAGCATTGTCAGA-ACAGCTTAGCCGTTTCACCAATTTAATACACTTGGA 2798
| || | | | ||||||| | || | |||| | || ||||||||||| | |||| ||
Sbjct 2726 ATGA-TGTTTTTGAATTGTCATATAC-GTTTAGTCATTGCACCAATTTAACATACTTAGA 2783
Query 2799 CCTAAGCAGCCACGACT-T--TGACGCAATCCCTGAAAGC-ATCAAGGAG-C-TGTCAT- 2851
||| ||| | | || | | ||||| | | |||| || | |||| | | | | | |
Sbjct 2784 CCTCAGCGGAAATGA-TATGGTGACG-A-TGCCTGTAA-CTATCA-G-ATTCCT-T-AGG 2835
Query 2852 CT-TTGG-TAACTCTGTGCCTCAATAACTGCAAGAAACTCAAATCAGTGGAAGAGCTTCC 2909
|| ||| || |||| ||||||||| |||||||||||||||| ||| ||| | |||||||
Sbjct 2836 CTGTTGAATA-CTCTCTGCCTCAATGACTGCAAGAAACTCAAGTCAATGGTACAGCTTCC 2894
Query 2910 AC-AAAGCCTCA-AGCATCTCTACGCACACGGCTGCGA-TTCCCTGGAAAATGTAT-C-C 2964
|| ||| ||| | | | |||||| |||| |||||| | ||||||||||| | ||| | |
Sbjct 2895 ACCAAA-CCTTACATC-TCTCTATGCACGTGGCTGC-ACTTCCCTGGAAA-T-TATTCAC 2949
Query 2965 CTTTCCCCAA-ATCATTCAATCAAACACCTCGATCTTAGC 3003
||| ||| ||||||| || |||||| | |||||||||
Sbjct 2950 CTT-CCCTTGGATCATTCCATAAAACACGTTGATCTTAGC 2988
> AT5G48775.1 | Symbols: | other RNA | chr5:19774170-19776460
FORWARD LENGTH=2060
Length=2060
Score = 82.4 bits (44), Expect = 3e-14
Identities = 103/130 (79%), Gaps = 10/130 (8%)
Strand=Plus/Minus
Query 2406 TAGCTTCTCAGCTTTCC-CGTGCTTGGTAGAGTTGAATCTAATCAACTTAAATATCCAGA 2464
|||||| |||| ||||| | || || ||||| ||||| || ||| |||| || |||
Sbjct 379 TAGCTTTTCAGATTTCCTC-TGGTTAACCGAGTTAAATCTCATAAACCTAAACAT--AGA 323
Query 2465 AA--ATCCCAG-TCGACATTGGTCTAATGCA-GTCACTAGAGAAACTGGACCTCAGCGGA 2520
|| ||||||| | |||||||| || |||| ||| ||| | ||||||||||||||||||
Sbjct 322 AAGCATCCCAGAT-GACATTGGCCTTTTGCAGGTC-CTACAAAAACTGGACCTCAGCGGA 265
Query 2521 AATGATTTCA 2530
||||||||||
Sbjct 264 AATGATTTCA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174731462469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5