BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908901
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72890.2 | Symbols: | Disease resistance protein (TIR-NBS c... 1042 0.0
> AT1G72890.2 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr1:27429916-27431960 FORWARD LENGTH=1529
Length=1529
Score = 1042 bits (564), Expect = 0.0
Identities = 672/724 (93%), Gaps = 8/724 (1%)
Strand=Plus/Plus
Query 551 GGGAAGATGACTCGAAGCTGGTCGACGGAATTACTGAGAAGATATCAAAAAAGTTGTTCT 610
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 660 GGGAAGATGACTCGAAGCTGGTCGATGGAATTACTGAGAAGATATCAACAAAGTTGTTCT 719
Query 611 CGGAAAAACCAAGGAATGATAATACCCTAATTGGGATCGACCAACACATGGGGGAATTGT 670
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 720 CGGAAAAACCAAGGAATGATAATATCCTAATTGGTATCGACCAACACATGGGGGAATTGT 779
Query 671 ATCCACTACTTCATCTGAATTCCAATGAAGATGTTCGAGTAATTGGGATTTGGGGAAGAG 730
|||||||| || | |||||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 780 ATCCACTATTTAACCTGAATTCGAATGAAGATGTTCAAGTCATTGGGATTTGGGGAAGAG 839
Query 731 GAAGTATTGGTAGATCAGCACTAGCAAACCACGTTTACCAAAACATCAAACATCACTTCG 790
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 840 GAAGTAATGGTAGATCAGCACTAGCAAGCCACGTTTACCAAAACATCAAACATCACTTTG 899
Query 791 AAGCTCATTGTTTTCTCGAAGACGTGAGACGGATTTCACTACATTGCCGCAAATCTCATT 850
||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||
Sbjct 900 AAGCTCATTGTTTTCTCGAAGACGTGAGACGGATTTCGCTACATTTCCGTGACTCTCATT 959
Query 851 TACAAGATGAGCTTCTTTTGAAGATGCAAGGAGAAGGTTTGACAACAAAGAGCTGTCGTA 910
|||||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||
Sbjct 960 TACAAGATGAGCTTCTTTCAAATATGCAAGGAGAAGGTTTGACAACAAAGAACTGTCATA 1019
Query 911 GGTGTCTTAAGACGATTAAAGCAAGGCTAAGGAACAAGAAGGTTCTTCTTGTGGCGAACG 970
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGTGTCTTAAGACTATCAAAGCAAGGCTAAGGAACAAGAAGGTTCTTCTTGTGGCGAACG 1079
Query 971 ATGTAGACAAGCTCGAACAATTCGATGCACTTGCTGAAGAATTTAGCTGGTTTGGTCCTG 1030
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATGTAGACAAACTTGAACAATTTGATGCACTTGCTGAAGAATTTAGCTGGTTTGGTCCTG 1139
Query 1031 GGAGCAGAATCATCATTACCACACAAGACAGGCAATTGCTTGTTTCATCAGTGGTGAGGA 1090
| |||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||
Sbjct 1140 GAAGCAGAATCATCATAACCACACAAGATAGACAATTGCTTATTTCATCAGTAGTGAGGA 1199
Query 1091 GTGTCTACGAAGTTGAGCTGTTGAGATGCTACGAAGTTCGTCAGCTCTTTAGGTCAGATG 1150
|||||||||||||| |||| |||||||| |||| ||||||| |||||||||||||| |||
Sbjct 1200 GTGTCTACGAAGTTAAGCTCTTGAGATGTTACGCAGTTCGTGAGCTCTTTAGGTCAAATG 1259
Query 1151 CCTTCAAAGAAAGAGA------CGATCCTGTTGGTTTCGAGCAGTCTACATATCGAGCCA 1204
|||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 1260 CCTTCAAAGAAAGAGAAAGAGACGATCCTGTTGGGTTCGACCAGTCTACATATCGAGCCA 1319
Query 1205 TGTATATTTCAGGTCATGT-TCTTTTGACCTTGAGATATATTTTCACTTTGTTGTGTGAC 1263
||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGTATATATCAGGTCATGTGT-TTTTGACCTTGAGATATATTTTCACTTTGTTGTGTGAT 1378
Query 1264 AGAG 1267
||||
Sbjct 1379 AGAG 1382
Score = 809 bits (438), Expect = 0.0
Identities = 521/561 (93%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 1 ATGAACACGATC-TTAAAAAACTTATCGTGTTTTAAGAAAAAGGTTAAATCTTTACGAAT 59
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 32 ATGAACACGATCTTTAAAAAA-TTATCCTGTTTTAAGAAAAAGGTTAAATCTTTACGAAT 90
Query 60 ATTCGAATCCAGGTCACTATCTTCTTCGTCTTCTTCCTCATTCACTCCTCAAATA-TTCG 118
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 91 ATTCGAATCCAGGTCACTCTCTTCTTCGTCTTCTTCCTCATTCACTCCTCAAA-AGTTCG 149
Query 119 ACGTTTTTCTAAGCTTCAGAGGCAAAGATACTCGCAAGAACTTCATCAGTTTTCTCCACA 178
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 150 ACGTTTTTCTAAGCTTCAGAGGCAAAGATACTCGCAAGAACTTCGTCAGTTTTCTCTACA 209
Query 179 AGGAGCTAGAATCAAAAGGGATTCGAACTTTCAAAGACGACAAGGAACTAGAGAGAGGCC 238
||| ||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 210 AGGCGCTAGTATCAAAAGGGATTCGAACTTTCAAAGACGACGAGGAATTGGAGAGAGGCC 269
Query 239 GTCCGATTTCGCCGGAGCTTCTCCAAGCAATCAAAGGGTCGAGAATCGCCGTCGTGGTGG 298
|||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 270 GTCCGATTCCGCCGGAGCTTCGCCAAGCAATCAAAGGGTCGAGAATCGCCGTGGTCGTGG 329
Query 299 TCTCTGTGAA-TTACGCTGCTTCGTTCTGGTGTCTCGAAGAACTCAAGGAGATTTTGAAA 357
||||||| || |||| |||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct 330 TCTCTGT-AACTTACCCTGCCTCGTCCTGGTGTCTCGAAGAACTCAGGGAGATTCTGAAA 388
Query 358 CTTGAGAATCAGGGTTTGCTCACTGTGATACCCATTTTCTATGAGATTGATCCTTCAGCC 417
|||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 389 CTTGAGAAGCTGGGTTTGCTCACTGTAATACCCATTTTCTATGAGATTAATCCTTCAGAC 448
Query 418 GTGAGGAGACAGATCGGAGTAGTCGCGAAACATTTCAAGAAGCATGAGAAGAGAGAAAGC 477
||||||||||||| |||||||||| | ||||| ||||||||||||||||||||| | |||
Sbjct 449 GTGAGGAGACAGAGCGGAGTAGTCTCAAAACAGTTCAAGAAGCATGAGAAGAGACAGAGC 508
Query 478 AAAGAAAGAGTCAAATCGTGGAAGGAAGCGTTGAACAAATTGGCTAATCTCTCCGGCGAG 537
| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 509 AGAGAAAGAGTCAAATCGTGGAGGGAAGCGTTGACCAAATTGGCTAGTCTCTCCGGCGAG 568
Query 538 TGTTCAAAGGATTGGGAAGAT 558
||||||||| |||||||||||
Sbjct 569 TGTTCAAAGAATTGGGAAGAT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5