BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908907
Length=2223
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72960.1 | Symbols: | Root hair defective 3 GTP-binding pro... 3579 0.0
AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding... 1035 0.0
AT5G45160.1 | Symbols: | Root hair defective 3 GTP-binding pro... 394 2e-108
> AT1G72960.1 | Symbols: | Root hair defective 3 GTP-binding protein
(RHD3) | chr1:27446236-27450862 FORWARD LENGTH=2415
Length=2415
Score = 3579 bits (1938), Expect = 0.0
Identities = 2150/2249 (96%), Gaps = 28/2249 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCCTCAAAGCAGTGGGAAGAGTACATTATTGAATCATTTGTTTGGAACAAACTTT 60
|||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 169 ATGGGTCCTCAAAGTAGCGGGAAAAGTACACTATTGAACCATTTGTTTGGAACAAACTTT 228
Query 61 ATGGAGATGGATGCATTTAAGGGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGA 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ATGGAGATGGATGCATTCAAGGGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGA 288
Query 121 TGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTGGAGGGCACCGATGGAAGAGAG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 289 TGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTAGAGGGCACCGATGGCAGAGAG 348
Query 181 CGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCCCTTTTCGCTCTTGCTATCTCG 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 349 CGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCTCTTTTCGCTCTTGCTATCTCT 408
Query 241 GATATCGTCTTGATCAACATGTGGTGTCACGATATTGGCCGTGAACAAGCTGCTAATAAA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 409 GATATCGTCTTGATCAACATGTGGTGTCACGACATTGGCCGTGAACAAGCTGCTAATAAA 468
Query 301 CCTCTCTTGAAAACTGTCTTTCAGGTTATGATGCGATTGTTTAGTCCACGTAAAACAACA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 469 CCTCTCTTGAAAACTGTCTTTCAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACA 528
Query 361 ATGTTGTTTGTAATACGAGATAAAACCCGGACGCCGTTGGAAAATTTAGAGCCTGTGTTA 420
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 529 ATGCTGTTTGTAATACGAGATAAAACCCGGACACCGTTGGAAAATTTAGAGCCTGTCTTA 588
Query 421 AGAGAAGATATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGAGAAGATATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACT 648
Query 481 CCTCTAAGCGACTTTTTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAGAAGGAA 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CCTCTAAGTGACTTTTTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAGAAGGAA 708
Query 541 GAACAATTTAAAGAGCAGGTTGCTAGTTTGAGACAACGGTTCATGCATTCTATTGCACCG 600
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAACAGTTTAAAGAGCAGATTGCTAGTTTGAGACAACGGTTCATGCATTCTATTGCACCG 768
Query 601 GGTGGTCTTGCTGGAGACAGAAGAGGAGTGATTCCAGCCTCAGGTTTTGCATTTAGTGCA 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGAGGTCTTGCTGGAGACAGAAGAGGAGTGATTCCAGCCTCAGGTTTTGCATTTAGTGCA 828
Query 661 GATCAAATCTGGAGAGTCATCAAAGAAAATAAGGATCTTGACCTTCCAGCCCACAAGGTC 720
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 829 GATCAGATCTGGAGAGTCATCAAAGAGAATAAGGATCTTGACCTTCCAGCCCACAAGGTC 888
Query 721 ATGGTAGCTACTGTGCGGTGTGAAGAAATTGCAAATGAGAAGTTTGCGCATTTCATTACA 780
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATGGTGGCTACTGTGCGGTGCGAAGAAATTGCAAATGAGAAGTTTGCGCATTTCATTACA 948
Query 781 AACGAGGACTGGCGCCAACTGGATGAGGAGGTGCAAGCTGGTCCAGTTTCTAATTTTGGA 840
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 949 AACGAGGACTGGCGCAAACTGGATGAGGAGGTGCAAGCCGGTCCAGTTTCTAATTTTGGA 1008
Query 841 AAGAGGCTTACTACCATTCTCGGATCTTGCTTATCAGAATATGACGGGGAGGCTACATTC 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1009 AAGAGGCTTACTACCATTCTCGGTTCTTGCTTATCAGAATATGACGGGGAGGCTACATTC 1068
Query 901 TTCGATGAAGGTGTCAGATCTTCGAAGAGACAACAGCTTGAAGAAAAGCTTCTCCAACTA 960
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 TTCGATGAAGGTGTCAGATCTTCGAAGAGACAGCAGCTTGAAGAAAAGCTTCTCCAACTT 1128
Query 961 GTGAATCCAGCGTTTCAAGATGTATTGGGACATATAAGATGGGGAATGCTTGAGAAGTTT 1020
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1129 GTGAATCCAGCGTTTCAAGATGTATTGGGACATATAAGATGGGGAATACTTGAAAAGTTT 1188
Query 1021 AAGGCTTCTTTTGATAAGGCTTTAGGCATTGGTGAAGGGTTTTCTTCAGCTTCCCAAGAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AAGGCTTCTTTTGATAAGGCTTTAGGCATTGGTGAAGGGTTTTCTTCAGCTTCCCAAGAT 1248
Query 1081 TGGTTCAAGACTTGCATGACCCAATTCGATGAAGAGTGTGCAGGTGCCATCATTGAACAA 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TGGTTCAAGGCTTGCATGACCCAATTCGATGAAGAGTGTGCAGGTGCCATCATTGAACAA 1308
Query 1141 GCCAATTGGGACACATCGAAAGTACGGGACAAGCTCGTCCGTGACATTGAGGCTCACATT 1200
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1309 GCCAATTGGGACACATCAAAAGTACGGGACAAGCTAGTACGTGACATTGAGGCTCACATT 1368
Query 1201 TCCTCTGTGCGGACTTCCAAGTTATCTGAACTTACCAGTCTATACGAGTCAAAAGTTCAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TCCTCTGTGCGGACTTCCAAGTTATCTGAACTTACCAGTCTATACGAGTCAAAAGTTCAT 1428
Query 1261 GAAGCATTATCAGAACCGGTGGAAGCTCTGTTGGAAGGAGCCAACGATGAAACGTGGA-C 1319
||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
Sbjct 1429 GAAGCTTTATCAGAACCGGTGGAAGCTTTGTTGGATGGAGCCAACGATGAAACGTGGAGC 1488
Query 1320 AACAGTAAAGAAGCTTCATCGGCGTGAAACTGAATCTGCAGTTTCTGGACTCAATAGTGC 1379
| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1489 A-CAGTAAAGAAGCTTCATCGGCGTGAAACTGAATCTGCAGTATCTGGACTCAGTAGTGC 1547
Query 1380 ACTAGCTGGTTTTGACATGGAAGAAGAAACAAGAGATAGAATGGTGAAGAGCCTTCAGGA 1439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 ATTAGCTGGTTTTGACATGGAAGAAGAAACAAGAGATAGAATGGTGAAGAGCCTTCAGGA 1607
Query 1440 TTATTCAAGAGGTGTCATTGAAACTAAGGCAAAAGAAGAAGCTG-GACGGGTTTTGATGC 1498
|||| ||||||||||||||||||| |||||||||||||| |||| | |||||||||||||
Sbjct 1608 TTATGCAAGAGGTGTCATTGAAACGAAGGCAAAAGAAGAGGCTGTG-CGGGTTTTGATGC 1666
Query 1499 GTATGAAGGAAAGGTTTGCTACAATCTTCAGCCATGATTCTGATTCAATGCCTCGTGTTT 1558
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1667 GTATGAAGGAAAGGTTTGGTACAATCTTCAGCCATGATTCTGATTCAATGCCACGTGTTT 1726
Query 1559 GGACCGGAAAAGAGGATCTTCGTGCCATTACTAAATCAGCTCGATCTGCTTCCTTGAAGT 1618
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1727 GGACCGGAAAAGAGGATCTTCGAGCAATTACTAAATCAGCTCGATCTGCTTCCTTGAAGT 1786
Query 1619 TGCTCTCAGTAATGGCTGTAATTCGATTGGGGGATGAACCCGATAACATCGAGAAGACAC 1678
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1787 TGCTCTCAGTAATGGCTGTCATTCGATTGGGGGATGAACCTGATAACATCGAGAAGACAC 1846
Query 1679 TAAATGTTGCTCTGTTGGATCCAACAAAGAATGAAACTTCTaaaaaaaGCATTACAACAT 1738
||| ||| |||||| ||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1847 TAACTGTAGCTCTGCTGGATCCAACAAAGAATGATACTTCTAAGAAAAGCATCACAACAT 1906
Query 1739 CTGATCCACTGGCTTCAAGCACTTGGGATGAGATTCCATCATCAAGAACTTTGATCACAC 1798
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1907 CTGATCCACTGGCTTCAAGCACTTGGGATGAGGTTCCATCATCAAGAACTTTGATCACAC 1966
Query 1799 CGGTGCAATGTAAATCTATATGGAGACAGTTCAAGACAGAAACAGAGTATACAG--A--- 1853
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1967 CGGTGCAATGTAAATCTATATGGAGACAGTTCAAGACAGAAACAGAGTATACAGTGACTC 2026
Query 1854 A-GC-------G-A-A-----C-A---GGCGTGGAAATAACTGGTTACCTCCTCCATGGG 1894
| || | | | | | |||||||||||||||||||||||||||||||||
Sbjct 2027 AAGCCATATCCGCACAGGAGGCGAACAGGCGTGGAAATAACTGGTTACCTCCTCCATGGG 2086
Query 1895 CAATTCTTGCATTGATCGTGCTTGGATTCAACGAATTCATGACTCTTCTAAGAAACCCTC 1954
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2087 CAATTCTTGCATTGATCGTCCTTGGATTCAACGAATTCATGACTCTTTTAAGAAACCCTC 2146
Query 1955 TCTATCTCGGTGTCATCTTTGTCGCTTTCCTTCTGGTAAAAGCACTGTGGACGCAATTGG 2014
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2147 TCTATCTTGGTGTCATGTTTGTCGCTTTCCTTCTGGCAAAAGCACTGTGGACGCAATTGG 2206
Query 2015 ATATCCCTGGCGAATTCCGCAATGGTGCACTTCCAGGGCTCATATCGATATCAGCAAAGT 2074
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2207 ATATCCCTGGCGAATTCCGCAATGGTGCACTTCCAGGGCTCATATCGATATCCGCAAAGT 2266
Query 2075 TTGTTCCCACGGTCATGAACCTTATCAAGAACCTTGCAGCGCAAGGCGAAGTCCCTCCTG 2134
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2267 TTGTTCCCACAGTAATGAACCTTATCAAGAACCTTGCAGCGCAAGGCGAAGACCCTCCTG 2326
Query 2135 CGGCTAATCCAGAGAGCCGTCGTTCGAGCAACAACACTTTTTCATCAGAAAATCCACCAT 2194
| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2327 CAGCTAATCCAGAGAACCGTCGTTCGAGCAACAACACTTCTTCATCAGAAAATCCACCAG 2386
Query 2195 ATaaaaaaaGCTCCTCAAAAGAGGACTAA 2223
|| | ||||||||||||||||||||||||
Sbjct 2387 ATCACAAAAGCTCCTCAAAAGAGGACTAA 2415
> AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding
protein (RHD3) | chr3:4565412-4571260 REVERSE LENGTH=2910
Length=2910
Score = 1035 bits (560), Expect = 0.0
Identities = 1472/1902 (77%), Gaps = 104/1902 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCCTCAAAGCAGTGGGAAGAGTACATTATTGAATCATTTGTTTGGAACAAACTTT 60
|||||||| ||||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 278 ATGGGTCCACAAAGTAGTGGGAAGAGTACGCTCTTGAATCATTTGTTTGGAACCAACTTT 337
Query 61 ATG-GAGATGGATGCATTTAAG-GGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAA 118
| | || |||||||||||| || |||||||||||||| || || || || ||| |||| |
Sbjct 338 A-GAGAAATGGATGCATTT-AGAGGAAGGTCTCAGACGACTAAGGGAATTTGGATTGCTA 395
Query 119 GATGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTGGAGGGCACCGATGGAAGAG 178
|||| || ||||| |||||||||||| |||| |||||||| ||||| |||||||| ||||
Sbjct 396 GATGCGCTGGTATTGAGCCTTGCACCGTTGTGATGGATTTAGAGGGTACCGATGGGAGAG 455
Query 179 AGCGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCCCTTTTCGCTCTTGCTA-TC 237
|||| || ||||||||||| || ||||| ||||||||||| ||||| || ||||| | ||
Sbjct 456 AGCGTGGTGAGGATGATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGC-AGTC 514
Query 238 TCGGATATCG-TCTTGATCAACATGTGGTGTCACGATATTGGCCGTGAACAAGCTGCTAA 296
|| || || | |||| || |||||||||||||| |||||||| || |||||||| || ||
Sbjct 515 TCAGACATAGTTCTT-ATAAACATGTGGTGTCATGATATTGGTCGGGAACAAGCAGCAAA 573
Query 297 TAAACCTCTCTTGAAA-ACTGTCTTTCAGGTTATGATGCGATTGTTTAGTCCACGTAAAA 355
||||||||| || ||| ||||| || |||||||||||||| ||||||||||| || || |
Sbjct 574 TAAACCTCT-TTTAAAGACTGTGTTCCAGGTTATGATGCGGTTGTTTAGTCCGCGGAAGA 632
Query 356 CAACAATGTTGTTTGTAATACGAGATAAAACCCGGACGCCGTTGGAAAATTTAGAGCCTG 415
|||| || ||||||| ||| |||||||||| |||||||| ||||||||||||| || |
Sbjct 633 CAACTTTGATGTTTGTTATAAGAGATAAAACACGGACGCCACTGGAAAATTTAGAACCAG 692
Query 416 TGTTAAGAGAAGATATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGG 475
|| | || ||||| ||||| |||||||||||||| ||||| |||||| | || ||||| |
Sbjct 693 TGCTGAGGGAAGACATTCAAAAGATATGGGATTCAGTTCCCAAGCCTCAGGCCCACAAAG 752
Query 476 AAACTCCTCTAAGCGACTTT-TTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAG 534
||||||| || ||||| ||| |||||||||||||| |||||||| || |||||||| ||
Sbjct 753 AAACTCCACTTAGCGA-TTTCTTCAATGTTGAAGTAGTTGCTCTCTCGAGTTATGAAGAA 811
Query 535 AAGGAAGAACAATTTAAAGAGCAGGT-TGCTAGTTTGAGACAACGGTTCATGCATTCTAT 593
|| ||||| ||||| ||||||||||| | | | |||||||||||||||| | || ||| |
Sbjct 812 AAAGAAGAGCAATTCAAAGAGCAGGTCTAC-AATTTGAGACAACGGTTCTTCCAATCTGT 870
Query 594 TGCACCGGGTGGTCTTGCTGGAGA-CAGAAGAGGAG-TGATTCCAGCCTCA-GGTTTTGC 650
||||| || || |||||||| || | || |||||| || | || ||| | | ||||||
Sbjct 871 CGCACCTGGCGGGCTTGCTGGTGATC-GACGAGGAGTTG-TCCCTGCC-AATGCTTTTGC 927
Query 651 ATTTAGTGCAGATCAAATCTGG-AGAGTCATCAAAGAAAATAAGGATCTT-GACCTTCCA 708
||||||||| | || || ||| | |||||||||||| || || || ||| || ||||||
Sbjct 928 TTTTAGTGCAAAACAGATGTGGCA-AGTCATCAAAGACAACAAAGA-CTTGGATCTTCCA 985
Query 709 GCCCACAAGGTCATGGTAGCTACTGTGCGGTGTGAAGAAATTGCAAATGAGAAGTTTGCG 768
|| ||||||||||||||||| |||||||| ||||| |||||||| ||||| || || |
Sbjct 986 GCACACAAGGTCATGGTAGCAACTGTGCGATGTGAGGAAATTGCCAATGA-AAAATT-CT 1043
Query 769 C-A-TTTCATTACAAACGAGGACTGGCGCCAACTGGATGAGGAGGTGCAAG-CTGGTCCA 825
| | ||| || | || ||| | |||||| | |||| |||| || | || |||||||
Sbjct 1044 CTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGAAGAGGCTGTAC-AGTCTGGTCCT 1102
Query 826 GTTT-CTAATTTTGGAAAG-AGGCTTA-CTACCATTCTCGGATCTTGCTTATCAGAATAT 882
|||| | | ||||| ||| | ||| | || | |||||| | | |||||||||| |||
Sbjct 1103 GTTTCCGGA-TTTGG-AAGAAAGCTGAGCT-CAATTCTCCAAGCAAGCTTATCAGAGTAT 1159
Query 883 GACGGGGAGGCTACATTCTTCGATGAAGGTGTCAGATCTTCGAAGAGACAACAGCTTG-A 941
||| || || |||| ||| || ||| |||| ||||| || ||||| ||||||| || |
Sbjct 1160 GACACAGAAGCGACATACTTTGAAGAAAGTGTTAGATCATCCAAGAGGCAACAGC-TGCA 1218
Query 942 AGAAAAGCTT-CTCCAACTAG-TGAATCCAGCGTTT-CAAGATGT-ATTGGGACATATAA 997
||||||| || | ||||| | | || ||| | ||| ||||| || || |||||| |
Sbjct 1219 AGAAAAG-TTATTGCAACTTGTTCAA-CCAAC-TTTCCAAGACGTGCTT-GGACAT-T-T 1272
Query 998 GATGG--GGAATGCTTGAGAAGTTTAAGGCTTCTTTTGATAAGGCTTTAGGCAT--TGGT 1053
|| || ||| ||||| || || ||| | ||||||| ||||| || || || |||
Sbjct 1273 GAGGGCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTT-GG-ATGCTGGA 1330
Query 1054 GAAGGGTTTTCTTCAGCTTCCCAAGAT--TG-GTTCAAGACTTGCATGACCCAA-TTCGA 1109
||||||||||| ||| | | | || || || | || || | ||||| | | || || ||
Sbjct 1331 GAAGGGTTTTCATCATC-TGCGAA-ATCCTGCGCTC-AGTCATGCAT-ATCTAAGTTTGA 1386
Query 1110 TGAA-GAGTGTGCAG-GTGCCATCATTGAACAAGCCAATTGGGACACATC-GAAAGTACG 1166
| || || |||| || | || | ||||||||||| || ||||| ||||| ||| | ||
Sbjct 1387 TAAAGGA-TGTGAAGAG-GCTGTTATTGAACAAGCAAAATGGGATACATCTAAAACT-CG 1443
Query 1167 GGACAAGCTCGTCCGTGACATTGAGGCTCACATTTCCTCTGTGCGGACTTCCAAGTTATC 1226
||| ||||| | ||||| ||||| ||||| || || ||||| || ||| | ||||| |
Sbjct 1444 GGAAAAGCTTGAGCGTGATATTGAAGCTCATATCTCTTCTGTCCGTACTGCAAAGTTGGC 1503
Query 1227 TGAACTTACCAGTCTATACGAGTCAAAAGTTCATGAAGCATTATCAGAACCGGTGGAAGC 1286
|||||| || | ||| || ||||||||| | ||| ||| ||||| | ||||||||||||
Sbjct 1504 TGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCCTTATCTGGACCGGTGGAAGC 1563
Query 1287 TCTGT-TGGAAGGAGCCAACGATGAAACGTGGACAACAGTAAAG-AAGCTTCATCGGCGT 1344
||| | |||| || || || |||||||| ||| || || | ||| ||||| | | | ||
Sbjct 1564 TCT-TCTGGATGGGGCTAATGATGAAACATGGCCAGCAAT-AAGAAAGCTACTTAGACGG 1621
Query 1345 GAAACTGAATCT-GCAGTTTCTGGACTCAATAGTGCACTAGCTGGTTTTGACATGGAAGA 1403
||| |||| | || || | ||| ||| | ||| || ||||||| || ||||| ||
Sbjct 1622 GAAGGAGAAT-TGGCTGTCTATGGTCTCTCCAACGCATTATCTGGTTTCGAAATGGACGA 1680
Query 1404 AGAAACA-AGAGATAGAATG-GTGAAGAGCCTTC-AGGATTATTCAAGAGGTGTCATTGA 1460
||||||| ||| || |||| || || | || || | ||| || ||||| | ||||
Sbjct 1681 AGAAACACGGAG-TAAAATGCTTGCTGA-TC-TCGAGAACTATGCACGAGGTATTGTTGA 1737
Query 1461 AACTAAGGCAAAAGAAGAAGCTGGACGGGTTTTGATGCGTATGAAGGAAAGGTTTGCTAC 1520
||| |||||||| ||||| |||||| | | ||||||| |||||||| || ||||||||
Sbjct 1738 AACCAAGGCAAAGGAAGAGGCTGGAAGAGCGATGATGCGCATGAAGGATAGATTTGCTAC 1797
Query 1521 AATCTTCAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACCGGAAAAGAGGATCTTC- 1579
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| | ||
Sbjct 1798 AATCTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGA-CATCA 1856
Query 1580 GTGCCATTACTAAA-TCAGCTCGATCTGCTTCCTTGAAGTTGCTCTCAGTAATGGCTGTA 1638
| || ||||| ||| | ||||| ||||| ||||||||| |||| || || ||||||||
Sbjct 1857 GAGCAATTACAAAAATG-GCTCGTTCTGCGTCCTTGAAGCTGCTGTCTGTTATGGCTGTT 1915
Query 1639 ATTCGATTGGGGGATGAACCCGATAACATCGAGAAGACACTAAATGTT-GCTCTGTTGGA 1697
|| || |||| ||||||| ||| || || ||||||||| | | | | |||||||| |
Sbjct 1916 ATACGCTTGGATGATGAACTCGACAATATTGAGAAGACATTGAC-GCTAGCTCTGTTTAA 1974
Query 1698 TCCAACA---AAGAATGAAACTTCTaaaaaaaGCATTA-CAACA-TCTGATCCACTGGCT 1752
| | || || |||| || ||| || ||||| | || || | |||| |||| ||
Sbjct 1975 TTCTACGGGCAACAATG---CTACTAGCAAGAGCATCAGCA-CAAT-TGATTCACTTGCC 2029
Query 1753 TCAAGCACTTGGGATGA-GATTCCATCATCAA-GAACTTTGATCACACCGGTGCAATGTA 1810
|||||||||||||| || | || || || || || | ||||||||||| ||||| ||||
Sbjct 2030 TCAAGCACTTGGGA-GAAGGTTGCACCAGAAAAGA-CGTTGATCACACCTGTGCAGTGTA 2087
Query 1811 AATCTA-TATGGAGACAGTTCAAGA-CAGAAACAGAGTATAC 1850
|||| | | ||||| || || |||| | || ||||| |||||
Sbjct 2088 AATC-ACTGTGGAGGCAATTTAAGAAC-GAGACAGAATATAC 2127
> AT5G45160.1 | Symbols: | Root hair defective 3 GTP-binding protein
(RHD3) | chr5:18264717-18270283 FORWARD LENGTH=2903
Length=2903
Score = 394 bits (213), Expect = 2e-108
Identities = 616/801 (77%), Gaps = 65/801 (8%)
Strand=Plus/Plus
Query 1 ATGGGTCCTCAAAGCAGTGGGAAGAGTACA-TTATTGAATCAT-TTGTTTGGAACAAACT 58
|||||||||||||| ||||||||||||||| || ||||||||| || ||| ||| | |
Sbjct 286 ATGGGTCCTCAAAGTAGTGGGAAGAGTACACTT-TTGAATCATCTT-TTTAAAACCAGTT 343
Query 59 TTATGGAGATGGATGCATTTAAGGGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAA 118
|| ||| |||||||| ||| ||||||| ||| || || |||||||| ||| | || |
Sbjct 344 TTCGGGAAATGGATGCTTTTGCGGGAAGGAGTCAAACAACTAAAGGTATTTGGATGGCTA 403
Query 119 GATGTGCCGGTATAGAGCCTTGCACCCTTG-TAATGGATTTGGAGGGCACCGATGGAAGA 177
| |||| ||||| ||||||| ||| ||| | |||||||||||||| || ||||| |||
Sbjct 404 GGTGTGTTGGTATTGAGCCTTTCACAATTGCT-ATGGATTTGGAGGGTACTGATGGGAGA 462
Query 178 GAGCGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCCCT-TTTCGCTCTTGCTAT 236
|| |||| |||||||| || |||| || ||||| |||||||| ||| ||| | ||| |
Sbjct 463 GAAAGAGGCGAGGATGACACTACATTTGAGAAACAAAGTGCCCTGTTT-GCTATAGCTGT 521
Query 237 CT-CGGATATCGT-CTTGATCAACATGTGGTGTCACGATATTGGCCGTGAACAAGCTGCT 294
| | ||||| || | |||| ||||||||||| || || ||||| | ||||| |||||
Sbjct 522 -TGCCGATATTGTAC-TGATAAACATGTGGTGCCATGACATTGGAAGGGAACAGGCTGCC 579
Query 295 AATAAACC-TCT-CTTGAAA-ACTGTCTTT-CAGGTTATGATGCGATTGTTTAGTCCACG 350
|| ||||| | | | | ||| || || ||| ||||| ||| ||||||||||||| || ||
Sbjct 580 AACAAACCAT-TGC-T-AAAGACAGT-TTTCCAGGTCATGCTGCGATTGTTTAGCCCTCG 635
Query 351 TAAAACAAC-AATGTTGTTTGTAATACGAGATAAAACCCGGACGCCGTTGGAAAAT--TT 407
||||||||| | || ||||| ||||| |||||||| ||| || | | | | ||
Sbjct 636 TAAAACAACTCTTCTT-TTTGTCATACGTGATAAAACAAAGACTCCAATAG-AGCTGCTT 693
Query 408 AGAGCCTGTG-T-TAAGAGAAGATATTCAGAAGATATGGGATTCTGTTC-CAAAGCCTGA 464
|| | ||| | ||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 694 -GA-AC-GTGCTCTAAGAGAAGATATTCAGAAGATATGGGATTCAGTTCGCAA-GCCTGA 749
Query 465 AGCACACAAGGAA-ACTCCTCTAAGCGACTTTTTCAATGT--TGAAGTTGTTGCTCTT-T 520
||||||||| || || ||||||| || || |||||||| ||| ||||||| || |
Sbjct 750 AGCACACAAA-AATACACCTCTAAATGAATTCTTCAATGTAATGA--TTGTTGCA-TTAT 805
Query 521 CCAGTTATGAGGAGAAGGAAGAACAATTTAAAG-A-GCAGGTTGCT-AGTTTGAGACA-A 576
|||| ||||| ||||| ||| |||| ||| | | | | |||||||| |||| ||| || |
Sbjct 806 CCAGCTATGAAGAGAAAGAAAAACAGTTTGA-GCAAG-AGGTTGCTGAGTT-GAGGCAGA 862
Query 577 CGGTTCATGCATTCTATTGCACC-GGGTGGTCTTGCTGGAGACAGAAGAGGAGT-GATTC 634
|||| | ||||| ||| |||| ||| || |||||||| || ||| | || || | |||
Sbjct 863 -GGTTTTTCCATTCCATTTCACCTGGG-GGACTTGCTGGTGATAGACGTGGTGTAG-TTC 919
Query 635 CAGCCTCAGG-TTTTGCATTT-AG-TGC-AGATCAAATCTGGAGAGTCATCAAAGAAAAT 690
| || ||||| |||| | ||| || | | || || || |||| ||| || ||||| |||
Sbjct 920 CTGCTTCAGGATTTT-C-TTTCAGCTCCCAG--CAGATTTGGAAAGTTATAAAAGAGAAT 975
Query 691 A-AGGATCTTG-ACCTTCCAGCCCACAAGGTCATGGTAGCTACTGTGCGGTGTGAAGAAA 748
| || || ||| ||||||| || |||||||| ||||| || ||||| ||||||||||| |
Sbjct 976 AGAG-AT-TTGGACCTTCCTGCTCACAAGGTAATGGTTGCCACTGTTCGGTGTGAAGAGA 1033
Query 749 TTGCAAATGAGAAGTTTGCGC 769
| || ||||||||| | ||||
Sbjct 1034 TAGCCAATGAGAAGCT-GCGC 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110290597365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5