BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908910
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72990.1 | Symbols: BGAL17 | beta-galactosidase 17 | chr1:27... 2857 0.0
> AT1G72990.1 | Symbols: BGAL17 | beta-galactosidase 17 | chr1:27457266-27462389
REVERSE LENGTH=2529
Length=2529
Score = 2857 bits (1547), Expect = 0.0
Identities = 1919/2089 (92%), Gaps = 63/2089 (3%)
Strand=Plus/Plus
Query 22 AGCTGGCCATCAACGGGAAGACAAACAAGACATCAATTGGCTTTTGTGTTGCTCCTGGTT 81
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 234 AGCTGGCCATCAACGGGAAGACAAAGAAGACATCAATTGGCTTCCATGTTGCTCCTGGTT 293
Query 82 CTTGTAGCTGTCGGAATCCATGTGCCCGTCTTAGCTC-T-T-CCTTCA---T--TGT-CT 132
||||||| |||||||||| |||| || ||||| |||| | | |||||| | | | ||
Sbjct 294 CTTGTAGTTGTCGGAATCTATGTTCCTGTCTTCGCTCTTCTCCCTTCACTGTCATATACT 353
Query 133 -CT--G-C-CT--C--CTGAAATACCTGGGGACGAGAAGATGATAATGATATCAAGGAAG 183
|| | | || | ||| |||||| ||||||||||||| || || || | |||
Sbjct 354 CCTCAGTCTCTACCTTCTGCTATACCTCAGGACGAGAAGATG---AT-ATCTC--GCAAG 407
Query 184 TTTTATATCAAAGATGACAGTTTCTGGAAAGATGGGAATCATTTTCAGATCATCGGTGGT 243
||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 408 TTTTATATCAAGGATGACAATTTCTGGAAAGATGGGAATCGTTTTCAGATCATTGGTGGT 467
Query 244 GATTTGCACTACTTCCGTGTTCTTCCTGAGTACTGGGAGGATCGGCTTCTAAGAGCCAAG 303
|||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 468 GATTTGCATTACTTTCGTGTTCTTCCAGAGTACTGGGAGGATCGGCTTTTAAGAGCCAAT 527
Query 304 GCTTTAGGCCTGAATACTATTCAAGTATACGTTCCTTGGAATCTGCATGAACCAAAGCCT 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GCTTTAGGCTTGAATACTATTCAAGTATACGTTCCTTGGAATCTGCATGAACCAAAGCCT 587
Query 364 GGGAAGATGGTTTTTGAGGGTATTGGTGATCTTGTGTCCTTTCTCAAGCTATGTGATAAA 423
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 588 GGGAAGATGGTTTTTGAGGGTATTGGTGATCTTGTCTCCTTTCTCAAGCTGTGTGAGAAA 647
Query 424 CTAGATTTTCTGGTTATGCTGCGTGCTGGACCTTACATCTGTGGAGAATGGGATTTGGGG 483
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 648 CTAGATTTTCTGGTTATGCTACGTGCTGGACCTTATATCTGTGGAGAATGGGATTTGGGA 707
Query 484 GGCTTTCCTGCTTGGGTACTTTCTGTGAAACCACGTCTCCAACTAAGGACATCAGATCCT 543
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 708 GGCTTTCCTGCTTGGTTACTTGCTGTGAAACCACGTCTCCAACTAAGGACATCAGATCCT 767
Query 544 GCATATCTTAAGTTGGTTGAAAGATGGTGGGATGTTCTGTTACCGAAGGTATTTCCTCTA 603
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GTATATCTTAAGTTGGTTGAAAGATGGTGGGATGTTCTGTTACCGAAGGTATTTCCTCTG 827
Query 604 ATTTACAGCAATGGGGGTCCTGTTATAATGGTTCAGATTGAAAATGAATATGGTTCATAT 663
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CTTTACAGCAACGGGGGTCCTGTTATAATGGTTCAGATTGAAAATGAATATGGTTCATAT 887
Query 664 GGAAATGACAAAGCCTATCTTCGTAAGCTAGTTAGTATGGCTAGGGGACACCTGGGGGAT 723
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GGAAATGACAAAGCTTATCTTCGTAAGCTAGTTAGTATGGCTAGGGGACACCTGGGGGAT 947
Query 724 GACATTATTGTGTACACAACAGATGGAGGGACAAAAGAAACTCTTGAGAAAGGAACTGTC 783
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 948 GACATTATTGTGTACACAACAGATGGAGGGACAAAAGAAACTCTTGATAAAGGAACTGTC 1007
Query 784 CCTGTAGATGATGTCTACTCAGCTGTTGATTTCACAACCGGTGATGATCCTTGGCCAATA 843
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1008 CCTGTAGCTGATGTCTACTCAGCTGTTGATTTCTCTACCGGTGATGATCCTTGGCCAATA 1067
Query 844 TTTGAATTGCAAAAGAAGTTTAATGCTCCAGGAAGATCACCTCCACTTTCCTCGGAGTTT 903
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TTTAAATTGCAAAAGAAGTTTAATGCTCCAGGAAGATCACCTCCACTTTCCTCGGAGTTC 1127
Query 904 TATACTGGTTGGCTAACACATTGGGGTGA-AAAGAT-AGCAAAAACCGATGCTGAATTTA 961
|| ||||||||||| || ||||||||||| ||| || | ||||||| ||||| |||||||
Sbjct 1128 TACACTGGTTGGCTCACGCATTGGGGTGAGAAA-ATTA-CAAAAACAGATGCCGAATTTA 1185
Query 962 CGGCAACTTCTCTTGAAAAAATACTGTCTCGAAATGGTTCTGCTGTGCTCTATATGGTGC 1021
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1186 CGGCAGCTTCTCTTGAAAAAATTCTGTCTCGAAATGGTTCTGCTGTGCTCTATATGGTGC 1245
Query 1022 ATGGAGGAACAAACTTTGGTTTCTACAATGGTGCAAATACTGGCTCTGAAGAATCTGACT 1081
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1246 ATGGAGGAACAAACTTTGGTTTCTACAATGGCGCAAATACTGGCTCTGAAGAATCTGACT 1305
Query 1082 ATAAACCAGATCTGACATCCTATGACTATGATGCTCCCATTAAGGAATCTGGTGACATAG 1141
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1306 ATAAACCAGATCTGACATCTTATGACTATGATGCTCCCATTAAGGAGTCTGGTGACATAG 1365
Query 1142 ATAATCCAAAATTCCAAGCTCTTCAGAGAGTGATTAAGAAGTACAATG-TTGCATCACAC 1200
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1366 ATAATCCAAAATTCCAAGCTCTTCAGAGAGTGATTAAGAAGTACAATGCTT-CACCACAC 1424
Query 1201 TCCATTATCCCCTCCAATAAGCAACGGAAAGCGTATGG-TCTTATCAAGATGCAGATGAC 1259
|||||| ||| |||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 1425 CCCATTAGCCCATCCAATAAGCAACGGAAAGCTTATGGCTCT-ATCAAGATGCAGATGAC 1483
Query 1260 AACTTCACTGATTGATTTAGTTAGTATGACAGATCCTGCAGATGTGATCATCTCCGCCAA 1319
||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1484 AACATCACTGTTTGATTTAGTTCGTATGACAGATCCTGCAGATGTGATCACCTCCGCCAA 1543
Query 1320 CCCAATTTCAATGGAATCTGCTGGACAGATGTTCGGATTTGTTTTATATGAGTCTTCATA 1379
|||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 1544 CCCAATTTCAATGGAATCTGTTGGACAGATGTTCGGATTTCTTTTATATGAATCTTCATA 1603
Query 1380 CATCGCAAAGAAGAGTGGGAATATACTAAGAATACCCAAGGTTCATGACAGAGCTCAAGT 1439
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1604 CATCGCAAAAAAGAGTGGGAATACACTAAGAATACCCAAGGTTCATGACAGAGCTCAAGT 1663
Query 1440 GTTTGTTTCATGTCTTTCCCAAGATGT-G--G-G--AGTACTGAGATACATTGGTACAAC 1493
||||||||||||||||||||||||||| | | | ||||||||||||||||||||| ||
Sbjct 1664 GTTTGTTTCATGTCTTTCCCAAGATGTTGATGTGGGAGTACTGAGATACATTGGTACTAC 1723
Query 1494 TGAAAGATGGAACAACCAACCTGTTTCTGTTCCAACTATTGAGTGCACCACAAACACTAG 1553
||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1724 TGAGAGATGGAACAACCAACCTATTTCTCTTCCAACTATTGAGTGTACCACAAACACTAG 1783
Query 1554 CTTATTTATTCTGGTTGAAAACATGGGTCGTGTAAACTATGGGCCATATATCTTTGATGA 1613
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1784 CTTATTTATTCTGGTTGAAAACATGGGTCGTGTAAATTATGGGCCATATATCTTTGATGA 1843
Query 1614 GAAGGGTATACTGTCTTCGGTATATCTAGATGGTCAAATTCTCCATGGATGGAAGATGAT 1673
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1844 CAAGGGTATTTTGTCTTCGGTTTATCTAGATGGTCAAATTCTCCATGGATGGAAGATGAT 1903
Query 1674 ACCAATTCCGTTTCACAACCTAAATCAAGTGCCAAATATCAGTTTCGAGATGCAACATAC 1733
||||||||| |||||||| |||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 1904 ACCAATTCCTTTTCACAATCTAAATCAAGAGCCAAATCTCACTTTCGAGATGCAACATAC 1963
Query 1734 TAAAAA--GA-G-AAAT-GT-CG---T--C----G--GT----CAAAAGGAACCAGCTCT 1772
||||| || | ||| || || | | | || | ||||||||| |||||
Sbjct 1964 CAAAAACAGAAGTAAAAAGTTCGAGCTTACTAATGATGTTGGTCGAAAGGAACCCGCTCT 2023
Query 1773 GTTTGCTGGTGAATTCTCTATCAACACT-ACAGAAGAAATCGAAGACACGTA-CTTATCA 1830
|||||||||||||||||||||||||| | | |||||||||| ||||||| || || ||||
Sbjct 2024 GTTTGCTGGTGAATTCTCTATCAACAGTGA-AGAAGAAATCAAAGACACATATCT-ATCA 2081
Query 1831 TTCAACGGTTGGGGTAAAGGAGTTGCTTTTGTCAATGAATTCAACATCGGAAGATATTGG 1890
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2082 TTCAACGGTTGGGGTAAAGGAGTTGCTTTTGTCAATGAATTCAACATTGGAAGATATTGG 2141
Query 1891 CCGTCTGTTGGACCACAGTGCAACCTCTATGTTCCTGCGCCGCTTCTTAAGCCTGGCAAA 1950
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2142 CCGTCTGTTGGACCACAGTGCAACCTCTATGTTCCTGCGCCACTTCTTAAGCGTGGCAAA 2201
Query 1951 AATACTTTGGTGATTTTCGAGTTGGAATCTCCGCATCTCGAGCTTTTACTGGAGGCAGTG 2010
|| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2202 AACACTTTGGTGGTATTCGAGTTGGAATCTCCGCATCTCGAGCTTTCGCTGGAGGCAGTG 2261
Query 2011 GATCAAGAAGACTTCGTATGCGGTTCTTATGATTCCAAAGTTAGTCAGT 2059
||||| |||||||| ||||||||| ||| ||||||||||| |||||
Sbjct 2262 GATCACCAAGACTTCACATGCGGTTCAAATGTTTCCAAAGTTAATCAGT 2310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158109075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5