BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908915

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73040.1 | Symbols:  | Mannose-binding lectin superfamily pr...   848    0.0  


> AT1G73040.1 | Symbols:  | Mannose-binding lectin superfamily 
protein | chr1:27475060-27475962 REVERSE LENGTH=716
Length=716

 Score =  848 bits (459),  Expect = 0.0
 Identities = 508/532 (95%), Gaps = 2/532 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCAACAACAACAAGGTGATAAGAATCTGACTGTGTTCGTAGGACCCTGGGGAAGA  60
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  87   ATGGATCAACAACAACAAGGTGATAAGAATCTGACAGTGTTCGTAGGACCCTGGGGAGGA  146

Query  61   AATGGAGGAACCACTTGGGATGATGGGATCTATCATGGTGTCCGTGAGATCAGACTTGTA  120
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| 
Sbjct  147  AATGGAGGAACCACTTGGGATGATGGGATTTATGATGGTGTCCGTGAGATCAGACTTGTT  206

Query  121  TATGATCATTGCATTGACTCCATCTCGGTGATCTACGATAAGAATGGTAAACCCGCGAAA  180
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  207  TATGACCATTGCATTGACTCCATCTCGGTGATCTACGATAAGAATGGTAAACCCGC-AAA  265

Query  181  -TCAGAGAAGCATGGAGGTGTAGGAGGCAACAAAACAGCAGAGCTAAAGCTGCAATACCC  239
             |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct  266  GTCAGAGAAGCATGGAGGTGTGGGAGGCAACAAAACATCAGAGATAAAGCTGCAATACCC  325

Query  240  AGATGAGTATCTGACTGGCGTGAGTGGCTACTACTCTATAGTGGTTGACAGTGGCACTCC  299
            ||| ||||||||||||||||||||||||||||||| |  | ||||| |||||||||||||
Sbjct  326  AGAGGAGTATCTGACTGGCGTGAGTGGCTACTACTGTCCAATGGTTAACAGTGGCACTCC  385

Query  300  TGTAATCAGATCAATGACCTTCAAGAGCAATAAACAGGTATATGGACCTTATGGAGTTGA  359
            |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  386  TGTAATCAGATCAATGACCTTCAAGAGCAATAAACAAGTGTATGGACCTTATGGAGTTGA  445

Query  360  ACAGGGAACACCCTTCACTTTCTCAGTCAATGGGGGACGCATTGTTGGCATGAGCGGTAG  419
            |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  446  ACAGGGAACACCCTTCACTTTCTCAGTCAATGGGGGACGCATTGTTGGTATGAACGGTAG  505

Query  420  GAGTGGCTGGTACCTTGACTCCATCGGCTTCCATCTATCACGCCCTAAATCAACCAAGAT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  506  GAGTGGCTGGTACCTTGACTCCATCGGCTTCCATCTATCACGCCCTAAATCAACCAAGAT  565

Query  480  GATCAACAAGCTTCTAAAGAAGATTCACTGGCTCACAAGGATTGTAGCATGA  531
            |||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct  566  GATCAACAAGCTCCGAAAGAAGATTCACTGGCTCACAAGGATAGTAGCATGA  617



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5