BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908956
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73410.1 | Symbols: ATMYB54, MYB54 | myb domain protein 54 |... 1186 0.0
AT1G17950.1 | Symbols: ATMYB52, BW52, MYB52 | myb domain protei... 398 5e-110
AT5G17800.1 | Symbols: AtMYB56, MYB56 | myb domain protein 56 |... 148 6e-35
> AT1G73410.1 | Symbols: ATMYB54, MYB54 | myb domain protein 54
| chr1:27601632-27603317 FORWARD LENGTH=1231
Length=1231
Score = 1186 bits (642), Expect = 0.0
Identities = 703/733 (96%), Gaps = 2/733 (0%)
Strand=Plus/Plus
Query 1 ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTT 280
Query 61 GTCGAACAATACGGTCCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCT 120
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 281 GTCGAACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTCCTGGTCGCTCT 340
Query 121 GGTAAGAGTTGTAGATTGAGGTGGTTTAATCAATTGGATCCAAGGATAAACCGAAACCCT 180
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 341 GGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCT 400
Query 181 TTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGG 460
Query 241 TCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCAC 520
Query 301 GTCATCATGGCTCGTCGCACACGTCAAACCTCTAAGCCTCGTCTTCTACCCTCGACGACT 360
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 521 GTCATCATGGCTCGTCGCACACGCCAAACCTCTAAGCCTCGTCTTCTTCCCTCGACGACT 580
Query 361 TCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATGATCGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 581 TCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATAATCAT 640
Query 421 AATTATAGTTCCGGTGATAGGAAGAAAATATTACCAGCAGACGTTATAAATTTCCCTTAC 480
||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 641 AATTATAGTTCCGATGATCGGAAGAAAATATTTCCAGCAGACTTTATAAATTTCCCTTAC 700
Query 481 CAGTTCTCTCATATCAATCATCTTCAGTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCT 540
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 701 AAATTCTCTCATATCAATCATCTTCACTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCT 760
Query 541 TTAAATCACAAAGCAAA-CGAGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGT 599
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TTAAATCACAAAGCAAATC-AGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGT 819
Query 600 AAACACGGATTCAAACAAGCGCGAGACTATAGATCAAGATTCGGGTCAAAGCAAACCCAG 659
|||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| |||
Sbjct 820 AAACACAGATTCAAACAAGAGCGAGATTATAGATCAAGATTCAGGTCAAAGCAAACGCAG 879
Query 660 TAACTCGGGCACCAAAAATGAAAGTCATGTTCCCTTCTTCGACTTTTTGTCTGTTGGAAA 719
| |||||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||
Sbjct 880 TGACTCGGACACCAAACATGAAAGTCATGTTCCATTCTTCGACTTTTTATCCGTTGGAAA 939
Query 720 CTCTGCCTCCTAG 732
|||||||||||||
Sbjct 940 CTCTGCCTCCTAG 952
> AT1G17950.1 | Symbols: ATMYB52, BW52, MYB52 | myb domain protein
52 | chr1:6177617-6179289 FORWARD LENGTH=1123
Length=1123
Score = 398 bits (215), Expect = 5e-110
Identities = 281/313 (90%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 7 ATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAG-GATCTTGTCGA 65
||||| || ||||||||||||||||| || |||||||||||||| ||| || || |||||
Sbjct 151 ATGTGTAGTCGAGGCCATTGGAGACCTGCAGAAGACGAGAAGCT-AAGAGAACTCGTCGA 209
Query 66 ACAATACGGTCCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCTGGTAA 125
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 210 ACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGCTCTCTGGTCGATCTGGTAA 269
Query 126 GAGTTGTAGATTGAGGTGGTTTAATCAATTGGATCCAAGGATAAACCGAAACCCTTTCAC 185
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 270 GAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACCGAAACCCTTTCAC 329
Query 186 GGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGGTCCAT 245
||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 330 GGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCATGGGAACAGATGGTCTGT 389
Query 246 CATCGCAAGGCTTTT-CCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCA 304
||||| || |||| ||| || ||||||||||||| || || ||||||||||||||||
Sbjct 390 GATCGCTAGATTTTTTCCC-GGTCGAACTGATAACGCTGTTAAAAACCATTGGCACGTCA 448
Query 305 TCATGGCTCGTCG 317
|||||||||||||
Sbjct 449 TCATGGCTCGTCG 461
Score = 67.6 bits (36), Expect = 2e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 687 TGTTCCCTTCTTCGACTTTTTGTCTGTTGGAAACTCTGCCTC 728
|||||| || ||||||||||||||||||||||||||||||||
Sbjct 840 TGTTCCATTTTTCGACTTTTTGTCTGTTGGAAACTCTGCCTC 881
> AT5G17800.1 | Symbols: AtMYB56, MYB56 | myb domain protein 56
| chr5:5877189-5879331 FORWARD LENGTH=1290
Length=1290
Score = 148 bits (80), Expect = 6e-35
Identities = 231/304 (76%), Gaps = 10/304 (3%)
Strand=Plus/Plus
Query 16 CGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTTGTCGAACAATACGGT 75
||||| || ||||||||| | ||||| | || |||||||| ||||| | || | |||
Sbjct 335 CGAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGT 394
Query 76 CCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCTGGTAAGAGTTGTAGA 135
|| || || |||||| || || | | || | |||| |||| || ||||||||||||
Sbjct 395 CCCCAAAACTGGAACTTGATTTCTAACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGA 454
Query 136 TTGAGGTGGTTTAATCAATTGGATCCAAGGATAAAC-CGAAACCCTTTCACGGAAGAAGA 194
||||| |||||||| ||| | || |||||||| ||| || | || |||||||| |||||
Sbjct 455 TTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGAGAGCC-TTCACGGAGGAAGA 513
Query 195 AGAAG-AAAGACTTTTAGCGGCTCATCGGATCC-ATGGGAAC-AGATGGTCCATCATCGC 251
|| || || || ||||| ||||||| || || |||| ||| || ||| | | ||| |
Sbjct 514 AG-AGTTTAGGCTGTTAGCAGCTCATC-GAGCCTATGGCAACAAG-TGGGCTTTGATCTC 570
Query 252 AAGGCT-TTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCATCATGG 310
| || ||| || || | || |||||||| ||||||||||||||||||||||||||||
Sbjct 571 TCGTCTCTTT-CCAGGTCGTACCGATAACGCTGTCAAGAACCATTGGCACGTCATCATGG 629
Query 311 CTCG 314
||||
Sbjct 630 CTCG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5