BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908965
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73540.1 | Symbols: atnudt21, NUDT21 | nudix hydrolase homol... 782 0.0
AT1G18300.1 | Symbols: atnudt4, NUDT4 | nudix hydrolase homolog... 377 5e-104
> AT1G73540.1 | Symbols: atnudt21, NUDT21 | nudix hydrolase homolog
21 | chr1:27645658-27646698 REVERSE LENGTH=946
Length=946
Score = 782 bits (423), Expect = 0.0
Identities = 470/493 (95%), Gaps = 2/493 (0%)
Strand=Plus/Plus
Query 88 GTACCGACACCGATTGAGAAAGATGTCTCTTTAGTCTCTCGTACCGGACGAGATCTGCAA 147
||||||||||||| |||||||| ||||||||| || ||||| |||||||||||||| |||
Sbjct 227 GTACCGACACCGAGTGAGAAAGTTGTCTCTTTGGTATCTCGAACCGGACGAGATCTCCAA 286
Query 148 CGTTACAACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CGTTACAACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAA 346
Query 208 CATGGTGGAGGAGAAATTGAAGTGCTTTTGATAAGTGCACAGAAGAAAGGGAAAGGAATG 267
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CACGGAGGAGGAGAAATTGAAGTGCTTTTGATAAGTGCACAGAAGAAAGGGAAAGGAATG 406
Query 268 TTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAGAG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAGAG 466
Query 328 ACGATTGAAGAAGCTGGTGTTACGGGTCATCTTGAGGAATCACTTGGGAAATGGCAATAC 387
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 467 ACAATTGAAGAAGCTGGTGTTACGGGTCAGCTTGAAGAATCACTTGGGAAATGGCAATAC 526
Query 388 AAAAGCAAAAGACATACTATGATTCATGATGGTTACATGTTTCCTTTGCTTGTTAGTCAA 447
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 527 AAAAGCAAAAGACATACTATGATTCATGATGGTCATATGTTTCCTTTGCTTGTTAGTCAG 586
Query 448 CAGTTTGAGCGGTGGCCTGAAGCTGACATT-AGACAACGTAAATGGGTTTCTTTGTCTGA 506
||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||||||||
Sbjct 587 CAGTTTGAGATATGGCCTGAATCTGA-ATTCAGACAACGCAAATGGGTTTCTTTGTCTGA 645
Query 507 AGCGATTGAGTTGTGTCAGAATTCGTGGATGAGAGAAGCTTTGGAAGCTTTTATTAACCG 566
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 646 AGCGATTGAGTTGTGTCAGAATTCGTGGATGAGAGAAGCTTTGGAAGCTTTCATTAACCG 705
Query 567 GAAATGTCAGACC 579
|||||| ||||||
Sbjct 706 GAAATGCCAGACC 718
> AT1G18300.1 | Symbols: atnudt4, NUDT4 | nudix hydrolase homolog
4 | chr1:6299687-6301086 FORWARD LENGTH=1065
Length=1065
Score = 377 bits (204), Expect = 5e-104
Identities = 411/506 (81%), Gaps = 33/506 (7%)
Strand=Plus/Plus
Query 91 CCGACACCGATTGAGAAAGATGTCTCTTTAGTCTCTCGTACCGGACGAGATCTGCAACGT 150
||| ||| ||| ||||||| ||||||||| |||||||||||||| || ||| |||| |||
Sbjct 255 CCG-CACAGATCGAGAAAGTTGTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGT 313
Query 151 TAC-AACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAACA 209
||| | || ||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 314 TACGATCA-CGCTGGCTATCGTCAAGTCGTCGGATGTGTACCGTATAGATACAAGAAACA 372
Query 210 TG--G----TGGAG--GAGA---AA-T--T-GAAGTGCTT-TTGATAAGTGCACAGAAGA 253
| | ||||| || | || | | |||| ||| ||| | ||||| | | |
Sbjct 373 AGAAGTCAATGGAGTTGAAACCCAAGTAATCCAAGTTCTTCTTG-TCAGTGCTC---A-A 427
Query 254 AAGGG-AAAGGAATGTTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAA 312
||||| |||||||||||||| ||||||||||||||||||| ||||||||||| || |||
Sbjct 428 AAGGGCAAAGGAATGTTATTTCCAAAAGGAGGTTGGGAGACGGATGAATCAATGGAGGAA 487
Query 313 GCTGCTTTAAGAGAGACGATTGAAGAAGCTGGTGTTACGGGTCATCTTGAGGAATCA-CT 371
|||||||| ||||||||||| |||||||| ||||| || || | || || ||| | ||
Sbjct 488 GCTGCTTTGAGAGAGACGATCGAAGAAGCGGGTGTAACAGGAGAGCTCGAAGAA-AAGCT 546
Query 372 TGGGAAATGGCAATACAAAAGCAAAAGACATA-CTATGATTCATGATGGTTACATGTTTC 430
|||||||||||||||||||||||||||||||| | || ||||| ||||| || ||||||
Sbjct 547 TGGGAAATGGCAATACAAAAGCAAAAGACATAGC-ATAATTCACGATGGGTATATGTTTG 605
Query 431 CTTTGCTTGTTAGTCAACAGTTTGAGCGGTGGCCTGAAGCTGACATTAGACAACGTAAAT 490
|||||||||| |||||| |||| ||||| |||||||| || || || |||||||| | ||
Sbjct 606 CTTTGCTTGTCAGTCAAGAGTTCGAGCGATGGCCTGAGGCGGAAATGAGACAACGCAGAT 665
Query 491 GGGTTTCTTTGTCTGAAGCGATTGA-GTTGTGTCAGAATTCGTGGATGAGAGAAGCT-TT 548
|||| |||| |||||| | || || |||||||||| |||||||||||||||| ||
Sbjct 666 GGGTAAGTTTGGATGAAGCAAGAGAAGTA-TGTCAGAATTGGTGGATGAGAGAAGCTCTT 724
Query 549 GGAAGCTTTTATTAACCGGAAATGTC 574
| |||| || ||||||| ||||||||
Sbjct 725 G-AAGCATTCATTAACCTGAAATGTC 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5