BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908997

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73770.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   717    0.0  


> AT1G73770.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis 
thaliana protein match is: Ribosomal protein S24/S35, mitochondrial 
(TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins 
in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; 
Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 
(source: NCBI BLink). | chr1:27742128-27743148 FORWARD LENGTH=855
Length=855

 Score =  717 bits (388),  Expect = 0.0
 Identities = 521/584 (89%), Gaps = 13/584 (2%)
 Strand=Plus/Plus

Query  1    ATGAGACGATTTCTTCAAAGAGTTCCCACTTTGTTGGCTCGAAATTTCCTTCACTCGCCC  60
            |||||||||||||| || |||||||||| |||  ||||||||||| |||||||||| |||
Sbjct  88   ATGAGACGATTTCTGCAGAGAGTTCCCAGTTTACTGGCTCGAAATATCCTTCACTCACCC  147

Query  61   GCCAATTTCCGTCA-TT-CGAA-CATCAACCCTCGTGTTGTTGTTGTTCCTCTCTTCGAA  117
            || |||||||| || ||  ||| || ||||||||  | ||||||||||||||||||||||
Sbjct  148  GCAAATTTCCGCCATTTGAGAATCAACAACCCTC--G-TGTTGTTGTTCCTCTCTTCGAA  204

Query  118  CGAGCTATTTCCCGATTCGTCTTCTTCTCTTCCGAGTCCGATTCGGCGCGTGGTTTCAAA  177
            |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct  205  CGAGCTATTTCCCGGTTCGTCTTCTTCTCTTCCGAGTCCGACTCGTCGCGTGGTTTCAGA  264

Query  178  AAC-GACGAGGTTCTTTCTAAAGAAGAGCTGAAAAAGAGAATTCAAAGCTTTTTGGATGA  236
            | | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  265  A-CTGAAGAGGTTCTTTCTAAAGAAGAGCTGAAAAAAAGAATTCAAAGCTTTTTGGATGA  323

Query  237  TGGAGATGAGGATTCAATACCTGACTTGTTTGAGGCAATGATGATTAGGAAGTTATCAGG  296
            |||| |||||||| | |||||||| || ||||||||| ||||||||||||||||||||||
Sbjct  324  TGGAAATGAGGATGCTATACCTGATTTATTTGAGGCATTGATGATTAGGAAGTTATCAGG  383

Query  297  GAAGCACGATGATAGCGACGATGAGGTGATGGATGAGGTGCGTAAGTATCCAGTTAACGA  356
            ||||||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||
Sbjct  384  GAAGCACGATGATAGTGATGATGAAGTGATGGATGTGGTGCGTAAGTATCCAGTTAACGA  443

Query  357  TGCACATAATGTCGATGAAACAGACTCTGATATCGAGGGTGATGGCCATGGTGATTCGTC  416
            ||||||||| || || || |  ||||||||||| ||| ||||||||||||||||||||||
Sbjct  444  TGCACATAAGGTTGACGATATTGACTCTGATATTGAGAGTGATGGCCATGGTGATTCGTC  503

Query  417  TGATTCAGATATAGAGACTGATGGCCTGAGAGATGGTGATTCGTCTGATTCCGATATAGA  476
            |||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| ||||
Sbjct  504  TGATTCAGATATTGAGAGTGATGACTTGAGAGATGGTGATTCGTCTGATTCCGATGTAGA  563

Query  477  GTTTGATGGCCTGAGA-GATGTTGGCTTGTCTGATGTCAATATCAAGATTGATGATGGTC  535
            |||||||||  | | | |||||||||||||||||||||||||| |||| |||||     |
Sbjct  564  GTTTGATGGTTTCA-ATGATGTTGGCTTGTCTGATGTCAATATTAAGACTGATGCC---C  619

Query  536  TTAAAGCTAATCGCTTGTCTTATTCTGACTCTGAAAGTGATTAA  579
            | ||||||||||||| |||||||||| |||||||||||||||||
Sbjct  620  TGAAAGCTAATCGCTCGTCTTATTCTTACTCTGAAAGTGATTAA  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5