BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909031
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74045.1 | Symbols: TET17 | tetraspanin 17 | chr1:27846111-2... 974 0.0
AT1G18510.1 | Symbols: TET16 | tetraspanin 16 | chr1:6373295-63... 243 3e-63
> AT1G74045.1 | Symbols: TET17 | tetraspanin 17 | chr1:27846111-27846840
FORWARD LENGTH=648
Length=648
Score = 974 bits (527), Expect = 0.0
Identities = 609/649 (94%), Gaps = 4/649 (1%)
Strand=Plus/Plus
Query 101 TGTCTTCTTGCATCCGAGAAACCTCAGGCCAGTTCTTGTTACTCGGTCTGATTCTTCTGT 160
|||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 2 TGTCTTCTTGCATCCGAGAAACCTCAAGCCAGTTCACGTTACTCGGTCTGCTTCTTCTGC 61
Query 161 TGATTCCTCAGATAGGTCTATACGGAATCTGTTGCCGCTCCAAACGCCTTTTCAATTAT- 219
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 TGATTCCTCAGATCGGTCTATACGGAATCTGTTGCCGCTCCAAACGCCTTTTCAATT-TC 120
Query 220 TTCTACTACGGCATGATTGTGGTCATTATCATTGTATCTTATTATTCAATCAAATGTTTC 279
|||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTCTTCTACGGCATGGTTGTGCTCATTATCATTGTATCTTATTATTCAATCAAATGTTCC 180
Query 280 ACTTACAACACCACTTTTGGCATCCCTAAGAACCCCGCCAAGGACCACCGCACCGTGCCA 339
| ||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||
Sbjct 181 ATTTACAACACCACTTTTGGCATAGCTAAGAATCCCGCCAAGGACAACCGTACCGTGCCA 240
Query 340 CAGTTACTCGGCCGGCTGGTCTCTAAGGAGAAGTTCGAGAACGTAGTCT-TGTGTATCAT 398
|||||||| || || ||||||||||||||||||||||||| ||| || | ||||||||
Sbjct 241 CAGTTACTTGGTAGGTTGGTCTCTAAGGAGAAGTTCGAGAAAGTAACCTAT-TGTATCAT 299
Query 399 TCACAACCATGACTGTAATTACAATGCCAGCAAAAACAGCAATGTTTGGAAGTATTGCTG 458
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCACAAACATGACTGTAATTACAATGCCAGCAAAAACAGCAATGTTTGGAAGTATTGCTG 359
Query 459 TGCACAACCGCCGGGATGTGGGACCATTACGATGTTTGACAAGCCAGGCGAGTGGAGTTG 518
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 360 TGCACAACCGGTGGGATGTGGGACCATAACGATGTTCGACAAGCCAGGCGAGTGGAGTTG 419
Query 519 GAAACAACAGTATGAACGGAACCAAGTTCCAGAAGAGTGTTCTTATGAATATTGTTTAGA 578
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAAACATCAGTATGAACGGAACCAAGTTCCAGAAGAGTGTTCTTATGAGTATTGTTTAGA 479
Query 579 TTGCAGAGGCTGCCAACTAAGCATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGCAGAGGCTGCCAACTAAGCATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTC 539
Query 639 AATGTTTGCTTACCCTGCTCTAGTCCTTTCCTGCATCAGTCTTGCCCTGGCTTGGTCTCT 698
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 540 GATGTTTGCTTACCCTGCTCTAGTCCTTTCCTGCATCAGTCTTGCTATAGCTTGGTCTCT 599
Query 699 CAAGGATACTATCCACGAAACCGAAGATTATCGAGGTTCTTATAGTTGA 747
|||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 CAAGGAGACTATCCACGAAAACGAAGATTATCGAGGTTCTTATAGTTGA 648
> AT1G18510.1 | Symbols: TET16 | tetraspanin 16 | chr1:6373295-6374090
FORWARD LENGTH=717
Length=717
Score = 243 bits (131), Expect = 3e-63
Identities = 493/658 (75%), Gaps = 64/658 (10%)
Strand=Plus/Plus
Query 31 ATGACGACAATAAT-CTTGATAAGTATAGGCCTCACAATGATGGGAACAGGTCTATACCA 89
||| |||| ||||| ||| ||| | |||||| | ||||||| |||||||||| |||| |
Sbjct 1 ATGGCGACCATAATCCTT-ATATGCATAGGCTTAACAATGACGGGAACAGGTTTATATTA 59
Query 90 -AAAAACAACAGTGTCTTCTTGCATCCGAGAAACCTCA-GGCCAG-TTC-TTGTTACTCG 145
| ||| |||||| || || |||||||||| | | || ||| ||| | || | | |
Sbjct 60 CAGAAA-AACAGTCTCGAAATGTATCCGAGAAA-CGGATGG-CAGTTTCGTCGTCA-TTG 115
Query 146 GTCTGATTCTT-CTGTTGATTCCTCAGATAGGTCTATACGGAATCTGTTGCCGCTCCAAA 204
|| || |||| ||| ||||||||||| | | ||| |||| ||||||||| | ||| |||
Sbjct 116 GTTTG-CTCTTGCTGGTGATTCCTCAGTTTGCTCTTTACGCAATCTGTTGTCACTCAAAA 174
Query 205 CGCCT-TT-TCAAT-TATTTCTACTACGGC-ATG--ATT-GT-GGTCATTATCATT-GTA 255
|| | || |||| || |||| | || ||| ||| || | |||| || || ||
Sbjct 175 CGTATGTTCACAATCTACATCTA-T---GCAATGATATTCGTAAG-CATTGTCCTTGGTG 229
Query 256 TCTTATTATTCAATCAAA-TGTTTCACT-TACAACACCACTTTTGGCATC-CCTAAGAAC 312
| || | || | ||| ||||||| | |||||||| || ||||| ||| || ||||||
Sbjct 230 GC-TACTCTT---T-AAAGTGTTTCA-TCTACAACACAACCTTTGGAATCGCC-AAGAAC 282
Query 313 CCCGCCAAGGACCACCGCACCGTGCC-A-CAGTTACTCGGCCGGCTGGTCTCT--AAGGA 368
|| || |||| | || ||| ||| | || || | ||| |||| ||| || ||| |
Sbjct 283 CCGGCTGAGGAAAAGCGAACC--GCCAAGCAATTGGTAGGCAGGCTAGTCCCTGAAAGTA 340
Query 369 GAAGTTCG-AGAACGTAGTC-TTGTGTATCATTCACAACCATGACTGTAA-TTACAATGC 425
|| || | | || || | ||| |||||||| |||||||||||||| || ||||||
Sbjct 341 -AACTT-GCA-AAAGT-CACGGAGTGCATCATTCATAACCATGACTGTAACTT-CAATGC 395
Query 426 CAGCAAAAACAGCAATGTTTGGAAGTATTGCTGTGCACAACCGCCG-GGATGTGGGA-CC 483
|||| |||||||||||||||||| ||||||||| || ||||| | |||||| |||
Sbjct 396 CAGCCAAAACAGCAATGTTTGGAGGTATTGCTGCGCGCAACC-AAGAGGATGT-GGAGTG 453
Query 484 ATTACGATGTT-TGACAAGCCAGGCGAGTGGAGTTGGAAACAACAGTATGAACG-GAACC 541
| || ||||| | ||| ||||| || |||||||||||||| || | | | | |||||
Sbjct 454 ACGACAATGTTCGGGCAA-CCAGGAGAATGGAGTTGGAAACATCAACACGTA-GAGAACC 511
Query 542 AAGTTCCAGAAGAGTGTTCTTATGAATATTGT-TTAGATTGCAGAGGCTGCCA-ACTAAG 599
| ||||| ||||| |||||||| ||||| ||| | || ||||||||| ||||| | | ||
Sbjct 512 ATGTTCCGGAAGAATGTTCTTACGAATACTGTCTCAG-TTGCAGAGGTTGCCAGA-TGAG 569
Query 600 CATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTCAATGTT-TGCTTACCCTGC 656
||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||
Sbjct 570 CATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTCCATGTTCT-CTTATCCTGC 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5