BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909043
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74210.1 | Symbols: | PLC-like phosphodiesterases superfami... 1877 0.0
> AT1G74210.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr1:27910314-27912941 FORWARD LENGTH=1417
Length=1417
Score = 1877 bits (1016), Expect = 0.0
Identities = 1126/1179 (96%), Gaps = 7/1179 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTTGCAAGATGCTTGCCCTTGATTTGGCTATCTCTACTTAC--TGTGTG-TGCT 57
||||||||| |||||||||| |||||||| ||||||||||||||||| |||||| ||||
Sbjct 83 ATGATTCTTACAAGATGCTTACCCTTGATATGGCTATCTCTACTTACTGTGTGTGCTGCT 142
Query 58 GGGAGGACATTGCACCCTCTCCCTGGTAAAGGACCCAAAAGTGTCAACCTTCAACTTCAG 117
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 143 GGGAGGACATTGCACCCTCTCCCTGTTAAAGGACCCAAAACTGTCAAGCTTCAACTTCAG 202
Query 118 ACTTCACGTCCTTATAACATCGCACACAGAGGTTCCAATGGAGAGATCCCAGAAGAAACT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 ACTTCACGTCCTTATAACATCGCACACAGAGGTTCCAATGGAGAGATCCCAGAAGAAACT 262
Query 178 ACTGCTGCATACTTGAAAGCAATTGAAGAAGGTACAGACTTCATAGAAACAGATATCTTA 237
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 263 ACAGCTGCATACTTGAAAGCAATTGAAGAAGGCACAGACTTCATAGAAACAGATATCTTA 322
Query 238 TCATCCAAAGATGGTGTGCTTATATGTTTCCATGATTGTATCCTCGACGAAACAACCGAT 297
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 323 TCATCCAAAGATGGTGTGCTCATATGTTTCCATGATTGTATTCTCGACGAAACAACCAAT 382
Query 298 GTTGCAAGCCACAAGGAGTTTGCTGATCGTAAAAGGACATATGATGTGCAAGGATTCAAC 357
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 383 GTTGCGAGCCACAAGGAGTTTGCAGATCGTAAAAGGACATATGATGTCCAAGGATTCAAC 442
Query 358 ATCACTGGCTTTTTCACTTTTGATTTTACACTCAAAGAACTAAAGCAACTACGTACAAAA 417
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 443 ATTACTGGCTTTTTCACTTTTGATTTTACACTTAAAGAACTAAAGCAACTACGTATAAAG 502
Query 418 CAGCGATATACTTTTCGGGACCAGCAATACAACGGAATGTATCCTATCATTACATTTGAG 477
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 503 CAGCGATATGCTTTTCGGGATCAGCAATACAACGGAATGTACCCTATCATTACATTTGAG 562
Query 478 GAA-TTCATTGCCATTGCTCGGGATGCTCCAAGAGTTGTTGGGATATATCCTGAGATAAA 536
||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 563 GAATTTC-TTACCATTGCTCGGGATGCTCCAAGAGTTGTTGGAATATATCCTGAGATTAA 621
Query 537 AAATCCAGTTTTAATGAACCAGCATGTCAAATGGCCTGGTGGTAAGAGATTTGAGGATAA 596
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 622 AAATCCAGTTTTAATGAACCAGCATGTCAAATGGCCTGGTGGTAAGAAATTTGAGGATAA 681
Query 597 AGTTGTGGAGACACTTAAGAAGTATGGGTATGGAGGCTCATATTTGTCCAAGAAGTGGTT 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 682 AGTTGTGGAGACACTTAAGAAGTATGGGTATGGAGGCTCGTATTTGTCCAAGAAGTGGTT 741
Query 657 GAAAAAACCATTATTTATTCAGTCATTTGCCCCAACTTCACTCGTGTACATATCAAATTT 716
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 742 GAAAAAACCACTATTTATTCAGTCATTTGCCCCAACTTCACTCGTGTACATATCAAACTT 801
Query 717 GACAGACTCGCCGAAAGTCCTTCTAATAGACGATGTTACCATGCCGACGCAAGACACTAA 776
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 802 GACAGACTCGCCGAAAGTCCTTCTAATAGACGATGTTACCATGCCAACGCAAGACACTAA 861
Query 777 CCAGACATACGCAGAGATCACATCAGATGCGTATTTCGACTACATCAAGCAATATGTTGT 836
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 862 CCAGACATATGCAGAGATCACATCAGATGCGTATTTCGAATACATCAAGCAATATGTTGT 921
Query 837 GGGTATCGGACCATGGAAGGATACAATAGTTCCAGTAAATAGCAACTATATGCTAGCCCC 896
||||||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||
Sbjct 922 GGGTATCGGACCATGGAAGGATACAATTGTTCCGGTAAACAACAACTATGTGCTAGCCCC 981
Query 897 CACAGATTTGGTCAAAAGAGCTCACGCACATAATCTACAGGTGCATCCATATACGTACAG 956
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 982 CACAGATTTGGTCAAAAGAGCTCACGCACACAATCTGCAGGTGCATCCCTATACGTACAG 1041
Query 957 GAATGAACACGAATACTTACACTTTAACTTTAGCCAAGACCCATATAAGGAATACGACTA 1016
|||||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 1042 GAATGAACACGAATTCTTACACTATAACTTTAGCCAAGACCCGTATAAGGAGTACGACTA 1101
Query 1017 CTGGATCAATAAGATTGGAGTTGATGGACTCTTCACTGATTTCACAGGCAGCCTCCATAA 1076
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CTGGATCAATGAGATTGGAGTTGATGGACTCTTCACTGATTTCACAGGCAGCCTCCATAA 1161
Query 1077 CTTTCAAGAATGGACATCTCCATTACCTGATAGCTCCAAGTCTCCACGACAGCTT-TTGG 1135
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1162 CTTTCAAGAATGGACATCTCCATTACCTGATACCTCCAAGTCTCCACGACAGCTTCTTAG 1221
Query 1136 GTCAAATTGCCTCATTGGTCCTCCCTTATGCAAAGGCTT 1174
||||||||||||||||||||||||||||||||||||||
Sbjct 1222 -TCAAATTGCCTCATTGGTCCTCCCTTATGCAAAGGCTT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5