BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909062
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74420.2 | Symbols: FUT3, ATFUT3 | fucosyltransferase 3 | ch... 2303 0.0
> AT1G74420.2 | Symbols: FUT3, ATFUT3 | fucosyltransferase 3 |
chr1:27967894-27969803 REVERSE LENGTH=1709
Length=1709
Score = 2303 bits (1247), Expect = 0.0
Identities = 1440/1532 (94%), Gaps = 17/1532 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCGGGGCAAGAAGAACTCGGCTGCGGGTGACCCACTCACCAGCTCGGATACTCGA 60
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 5 ATGAAGCGGGGCAAGAAGAACTCGGATGCGGGTGACCGACTCACCAACTCGGATACTCGA 64
Query 61 ACCGGGTATAGCGAATTGAATGTGATGATGAAACCAAGTTTGAGTTCGAT-AAAATCGAT 119
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 65 ACCGGGTCTAGCGAATTGAATGCGATGATGAAACCAAGTTTGAGTTCGATGAAAA-CGAT 123
Query 120 GGGTCTACTTCTGGCGGTTCTTATGGTTGCTTCGGTTATGTTCTCTCTGTCGGTGGTGCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 124 GGGTCTACTTCTGGCGGTTCTTATGGTTGCTTCGGTTATGTTCTCTCTGTCCGTGGTGCT 183
Query 180 CAGAGACCCACCTTCCGATGATGATGTTGTTGAGACTGAATCAGCCTCTAGTGTTCTTCA 239
|||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 184 CAGAGACCCACCTTCC---GATGATGTTATTGAGACTGAAGCAGCCTCTAGAGTTCTTCA 240
Query 240 GATCAGATT-------GC-ATC--A--AGATGGTGGACTTAGCGAGAAGAAGGAACAGCT 287
|| |||||| || ||| | |||||||||||||||||||||||||| ||||||
Sbjct 241 GAGCAGATTGCACCAAGCAATCGAATCAGATGGTGGACTTAGCGAGAAGAAGGCACAGCT 300
Query 288 CGGCGACTTTAATCTTGTGCCTAGTTTTGATAAAGGATCATGCTTGAGCAGGTATGAGGC 347
||| || ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 301 TGGCAACATTAATCTTGTGCCTAGTTTTGATAAAGAATCATGCTTGAGCAGGTACGAGGC 360
Query 348 GAGTTTATATCGAAAGGAATCGCCTTTTAAGCAATCCTCTTACCTGGATTACAGATTACA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGTTTATATCGAAAGGAATCGCCTTTTAAGCAATCCTCTTACCTGGATTACAGATTACA 420
Query 408 AAGATACGAAGATCTTCATACACGGTGTGGACCATTCACTACATCCTATAACTTGACACT 467
||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| |||||
Sbjct 421 AAGATACGAGGATCTTCATAGACGTTGTGGACCATTCACTAGATCCTATAACTTAACACT 480
Query 468 TGACAAACTCAAGTCAGGAGATCGGTCTGATGGTGAAGTTTCTGGTTGTAGATATGTAAT 527
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 TGACAAACTCAAGTCGGGAGATCGGTCTGACGGTGAAGTTTCTGGTTGTAGATATGTAAT 540
Query 528 ATGGTTGAACTCCAATGGTGAACTTGGGAATAGGATGCTGGGTCTAGCTTCAGCTTTTCT 587
||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 541 ATGGTTGAATTCCAATGGTGATCTTGGGAATAGGATGCTGAGTCTAGCTTCAGCTTTTCT 600
Query 588 GTATGCTCTCTTAACAAATAGGGTTTTACTTGTCGAACTAGGACTTGACATGGCTGATCT 647
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 601 TTATGCTCTCTTAACAAATAGGTTTTTACTTGTCGAACTAGGAGTTGACATGGCTGATCT 660
Query 648 TTTCTGCGAGCCATTTCCAAACACTTCGTGGTTTCTTCCCCTAGAGTTTCGGCTCAACAG 707
||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||
Sbjct 661 TTTCTGCGAGCCATTTCCAAACACTACTTGGTTTCTTCCCCCAGAGTTTCCGCTCAACAG 720
Query 708 CCTGTTCAAAGAGCAGTCTCTTCTTCTCAATTCTGGCAACCCGATGGTTGCATATCGACA 767
|| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 721 CCACTTCAACGAGCAGTCTCTTCTACGCAATTCTGGCAACCCGATGGTTGCATATCGACA 780
Query 768 TGTAGTTCGTGATTCCAGGGACCAACAAAAGCTTTTCTTTTGTGAGGAAAGTCAAGTTTT 827
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 TGTAGTTCGTGATTCCAGTGACCAACAAAAGCTTTTCTTTTGTGAGGATAGTCAAGTTTT 840
Query 828 GTTGGAGGAAACCCCATGGTTGATCTTAAAAGCGGATAGTTTCTTTCTCCCATCTCTCTT 887
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTGGAGGAAACCCCCTGGTTGATCTTAAAAGCGGATAGTTTCTTTCTCCCATCTCTCTT 900
Query 888 CTCAGTCTCGCCATTCAAGCAGGAACTTCAAAAGCTCTTCCCGGAAAAAGAAACAGCTTT 947
|||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 901 CTCAGTCTCGTCATTCAAGCAGGAACTTCAAATGCTCTTCCCGGAAAAAGATACTGCTTT 960
Query 948 TCACTTCTTCAGTCGGCATCTCTTCCACCCAACTAATGTTGTCTGGGGTCTCATTACACG 1007
||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 961 TCACTTCTTAAGTCAGTATCTCTTTCACCCAACTAATGTTGTCTGGGGTCTCATTACACG 1020
Query 1008 CTACTATCGCGCATATCTTGCTAGGGCTGATCAAATAATAGGAATCTATATTGGGGTCTC 1067
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1021 ATACTATAACGCATATCTTGCTAAGGCTGATCAAAGAATAGGAATCTATATTGGGGTCTC 1080
Query 1068 TGAGTCTGGAAATGATCAGTTCCAGCATTCGATAGATCAGATTCTAGCTTGTGGAACTAG 1127
||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1081 TGAGTCTGGAAATGAACAGTTCCAGCATTTGATAGATCAGATTTTAGCTTGTGGAACTAG 1140
Query 1128 ACATAAGCTGCTTCCTGAAGTTGACAAACAAAGACATCTCCCTTCAAGCCAAGTTCTGAA 1187
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1141 ACATAAGCTGCTTCCTGAAGTTGACAAACAAAGAAATCTCCCTTCAAGCCAAGTTCTGAA 1200
Query 1188 CCGAAAATCAACGGCAGTGTTTATCTCATCTTCTTCTCCAGGGTATTTTGAGAGTATCAG 1247
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1201 CCGAAAATCAAAGGCAGTGTTTATCTCATCTTCTTCTCCAGGGTATTTTAAGAGTATCAG 1260
Query 1248 GGACGTATATTGGGAAAATCCAACAGTGATGGGAGAGATAATCAGCGTTCACAAGCCGAG 1307
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGACGTATATTGGGAAAACCCAACAGTGATGGGAGAGATAATCAGCGTTCACAAGCCGAG 1320
Query 1308 CCACAAGGACTACCAAATAACCCCGAGGAACATGGAAAGTAAGAGAGCATGGGCTGAGAT 1367
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTACAAGGACTACCAAAAAACCCCGAGGAACATGGAAAGTAAGAGAGCATGGGCTGAGAT 1380
Query 1368 ATACCTTCTGAGTTGTTCTGATGTGCTGGTAGTCACAAGTTCATGGTCCTCGCTCGTGAA 1427
||||||||||||||||||||||| |||||| |||||| ||| ||||||||| |||||| |
Sbjct 1381 ATACCTTCTGAGTTGTTCTGATGCGCTGGTGGTCACAGGTTTATGGTCCTCACTCGTGGA 1440
Query 1428 GGTGGCTCATGGCCTTGGAGGGTTGAAGCCATGGGTACTGAACAAGGCTGAGAATGGGAC 1487
||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1441 GGTTGCTCATGGCCTTGGAGGGTTGAAGCCATGGGTGTTGAACAAAGCTGAGAATGGGAC 1500
Query 1488 TGCCCATGAACCTTACTGTGTGAGAGCAAGAT 1519
||||||||| ||||||||||||| ||||||||
Sbjct 1501 TGCCCATGAGCCTTACTGTGTGAAAGCAAGAT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5