BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg909109
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74875.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 741 0.0
> AT1G74875.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: F-box family protein (TAIR:AT1G67623.1); Has 36
Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:28128470-28129745
REVERSE LENGTH=732
Length=732
Score = 741 bits (401), Expect = 0.0
Identities = 580/663 (87%), Gaps = 26/663 (4%)
Strand=Plus/Plus
Query 218 CTTCATC-TCTATCCGAGATTAGCAATCTTCGATTAGTTTCGAAATCTTTTAAACGTATC 276
||||||| | |||||||| || ||||||||| ||||||||||||||| ||||||||||||
Sbjct 86 CTTCATCAT-TATCCGAGTTTCGCAATCTTCAATTAGTTTCGAAATCGTTTAAACGTATC 144
Query 277 AGCAACGATCGATACGTTCTGC-GCCGGCTTTCCCTCAATGAAATCCCTCTTTTTCCATG 335
||||||||||||||| |||||| | ||||||||||||||| ||||||||||||| |||||
Sbjct 145 AGCAACGATCGATACATTCTGCAG-CGGCTTTCCCTCAATAAAATCCCTCTTTTACCATG 203
Query 336 GTTTCGCAACCGTGGAAAATTTCACAATTTTATCAAAAGATGTCGCAAGAATGGAAACCC 395
| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 204 G---CGCAACCGTAAAAAATTTCACAATTTTTTCAAAAGATGTCGCAAGAGTGGAAACCT 260
Query 396 CGAGGCAATATACCGTAAAGGACTTGTCGATTACTTTCATCGAAATAGTTC-TAAACGCC 454
||||| ||||||||||||||||||||||||||||||||||| ||||| | | |||| |
Sbjct 261 AGAGGCTATATACCGTAAAGGACTTGTCGATTACTTTCATCGGGATAGT-CATGAACGTC 319
Query 455 AACGAGACAAAGGACTCAAACATATAGCAAAAGTTGCAAACAAGGGAAATCAAGAAGCAC 514
||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 320 AACGAGACAGAGGACTCAAACATATAGCAAAAACTGCAAACAATGGAAATCAAGAAGCAC 379
Query 515 AATATGTTTATGGATTGATCCTAATTTGTCTTGGTGGCGAAACAAAACAAAAGGGTTTCA 574
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 380 AATATGTTTATGGGTTGATCCTAATTTGTCTTGGTGGCAAAACAAAACAAAATGGTTTCA 439
Query 575 AGATCTTGTCTTCTTTAAGAAAACCTTTGATGT---CAAGTAC-ACTCGAGGAGATGGAA 630
|||||||||||||| || ||||||||||||||| ||| ||| | || |||||||||||
Sbjct 440 AGATCTTGTCTTCTCTACGAAAACCTTTGATGTTGTCAAATACGA-TCAAGGAGATGGAA 498
Query 631 AAACATCGGAAAAAGATCAGAAATGAGATGTGGTGGTGCGGCGAACCGATGATGAGACAT 690
|||||||||| | | ||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 499 AAACATCGGACACATATCAGAAAT-A--TGTGGTGGTGGGGCGAACCGATGATGAGACAC 555
Query 691 CT-CAAAAGAAGATATGTTCGTGTA-AATTGCAATTGTGATGGTCGAACAGATATTTTCT 748
|| ||||| ||| |||||||||| | || |||||||| ||||||||||| || || ||
Sbjct 556 CTACAAAA-AAGCTATGTTCGTG-AGAACTGCAATTGCGATGGTCGAACCGAGAT---CT 610
Query 749 TTGTAAAGAATAGTGGTTGGG-ATCGTTATGGTGAGCACAACGACATGATTACTTGTTCT 807
|| || || || || | |||||| ||||||| || |||||||| |||||| |||
Sbjct 611 TTCCCAACTATTGTT-TTCGTCATCGTTTTGGTGAGGACGACGACATGCTTACTTCTTCC 669
Query 808 GCTTGTGAGATTTGTTTGTGGCATCATGAAGTCAAACTTTTCTTTGCTAATATTGAGGAA 867
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 670 GCTTGTGAGATATGTTTGTGCCATCATGAAGTCAAACTTTTCTTTGCTAATATTAAGGAA 729
Query 868 TGA 870
|||
Sbjct 730 TGA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5